hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj34130/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1261  ( 729 res)   mfj34130

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD domain, G-beta repeat                       126.3    5.7e-34   6
TLE_N    Groucho/TLE N-terminal Q-rich domain           120.3    3.7e-32   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TLE_N      1/1       1    97 [.     1   138 []   120.3  3.7e-32
WD40       1/6     435   470 ..     1    38 []    17.7     0.28
WD40       2/6     480   517 ..     1    38 []    16.4     0.68
WD40       3/6     524   561 ..     1    38 []    29.5  7.8e-05
WD40       4/6     566   603 ..     1    38 []    40.1  4.9e-08
WD40       5/6     648   685 ..     1    38 []    24.1   0.0032
WD40       6/6     690   726 ..     1    38 []    14.7      2.2

Alignments of top-scoring domains:
TLE_N: domain 1 of 1, from 1 to 97: score 120.3, E = 3.7e-32
                   *->myPqsrrhpaalqapqqgplKftvaesldRiKeEFqfLqaqYHslKl
                          +r             ++f   e+   i     +L      l+l
   mKIAA1261     1    ----AR-------------IRFKSLEAAGSITVALPVL------LRL 24   

                   EceKLasEKtEmqRHYvmYYEmsYGLniEmHKqaEivKRLnaiiaqllPf
                                     YYEmsYGLniEmHKqaEivKRLnai+aq++Pf
   mKIAA1261    25 -----------------WYYEMSYGLNIEMHKQAEIVKRLNAICAQVIPF 57   

                   LsqeHqqqvlqAveRAKqvtmaELnaiigqqqlqaqqlsha<-*
                   LsqeHqqqv+qAveRAKqvtmaELnaiigqq lqaq+lsh    
   mKIAA1261    58 LSQEHQQQVVQAVERAKQVTMAELNAIIGQQ-LQAQHLSHG    97   

WD40: domain 1 of 6, from 435 to 470: score 17.7, E = 0.28
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                       ++ +l++    V++v +s +  +++ +g+  g++k+Wd   
   mKIAA1261   435    RQINTLnHG-EVVCAVTISNP-TRHVYTGGK-GCVKVWD    470  

WD40: domain 2 of 6, from 480 to 517: score 16.4, E = 0.68
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                        +       + +++++  pd g++l+ g++  t+ iWd   
   mKIAA1261   480    VSQLDClNRDNYIRSCRLLPD-GRTLIVGGEASTLSIWD    517  

WD40: domain 3 of 6, from 524 to 561: score 29.5, E = 7.8e-05
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                        +a+l+    +++++a+spd +++++s+++Dg+i +Wd   
   mKIAA1261   524    RIKAELtSSAPACYALAISPD-SKVCFSCCSDGNIAVWD    561  

WD40: domain 4 of 6, from 566 to 603: score 40.1, E = 4.9e-08
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      ++++ ++gHt++ +c+++s d g+ l +g+ D+t++ Wd   
   mKIAA1261   566    TLVRQFqGHTDGASCIDISND-GTKLWTGGLDNTVRSWD    603  

WD40: domain 5 of 6, from 648 to 685: score 24.1, E = 0.0032
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                        ++ l+ H+s V +++f++  g++++s + D+ +  W    
   mKIAA1261   648    PDKYQLhLHESCVLSLKFAHC-GKWFVSTGKDNLLNAWR    685  

WD40: domain 6 of 6, from 690 to 726: score 14.7, E = 2.2
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                        +   +   s+V ++++s d  +++++gS D++  +++   
   mKIAA1261   690    ASIFQSkES-SSVLSCDISVD-DKYIVTGSGDKKATVYE    726  

//