hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm05149/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1259  ( 1196 res)   mpm05149

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DEXDc    DEAD-like helicases superfamily, catalytic d   133.7      2e-35   1
HELICc   helicase superfamily c-terminal domain          88.8    6.4e-22   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DEXDc      1/1     160   351 ..     1   219 []   133.7    2e-35
HELICc     1/1     771   854 ..     1    86 []    88.8  6.4e-22

Alignments of top-scoring domains:
DEXDc: domain 1 of 1, from 160 to 351: score 133.7, E = 2e-35
                   *->gf.klrpyQkeaipwlleg....rdvilaapTGsGKTlafllpllel
                      +++kl +yQ+++++wl +  +++ ++ila+++G+GKT+ + ++ll +
   mKIAA1259   160    FNgKLKGYQLKGMNWLANLyeqgINGILADEMGLGKTV-QSIALLAH 205  

                   lkkgkplaskkgkgprvLvlvPtreLaeQwaeelkklgpslgvyfvevlk
                   l ++ +       ++++L+++P  +  ++w++e+ ++ p+        +k
   mKIAA1259   206 LAEREN------IWGPFLIISP-ASTLNNWHQEFTRFVPK--------FK 240  

                   vvglygG.sktkekeqlrklksgkt.dilvtTpgrLldll.ngkglsl.n
                   v+ + g++     + q+   +++++ ++++t+++ + ++++    +   +
   mKIAA1259   241 VLPYWGNpHD---RSQKTLYTQDAPfHVVITSYQLVVQDVkY---FQRvK 284  

                   ldlvilDEaHrlldmgsggdhgfgdqle.llkrlpknrqrlllSATppei
                   +++++lDEa+ l++       + +  ++ ll++  ++r+rlll++Tp  i
   mKIAA1259   285 WQYMVLDEAQALKS-------SSSVRWKiLLQF--QCRNRLLLTGTP--I 323  

                   enllklflnlpelfpnpvfisvgf..tlepieqf<-*
                   +n++++++       +++fi++   +++e++ ++   
   mKIAA1259   324 QNTMAELWA------LLHFIMPTLfdSHEEFNEW    351  

HELICc: domain 1 of 1, from 771 to 854: score 88.8, E = 6.4e-22
                   *->delaelLkellkdpgikvarlHGglsqeeReeilekFrkgki..kvL
                      d l+e++  +    ++ ++rl+G+ + +eR++ +++F++ +   ++L
   mKIAA1259   771    DLLEEYMVYR----KHTYMRLDGSSKISERRDMVADFQTRNDifVFL 813  

                   vaTdvaerGlDipgvdlVInydlpwspasyiQRiGRaGRaG<-*
                   ++T+++++G++++++d+VI+yd +w+p+ + Q+++Ra+R G   
   mKIAA1259   814 LSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLG    854  

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