hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mpm/mpm05149/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1259 ( 1196 res) mpm05149 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SNF2_N SNF2 family N-terminal domain 358.8 5.9e-104 1 Helicase_C Helicase conserved C-terminal domain 92.7 7.4e-24 1 ResIII Type III restriction enzyme, res subunit -15.6 0.0055 1 DEAD DEAD/DEAH box helicase -30.8 0.077 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- ResIII 1/1 162 324 .. 1 244 [] -15.6 0.0055 DEAD 1/1 176 330 .. 1 266 [] -30.8 0.077 SNF2_N 1/1 167 461 .. 1 356 [] 358.8 5.9e-104 Helicase_C 1/1 776 854 .. 1 76 [] 92.7 7.4e-24 Alignments of top-scoring domains: ResIII: domain 1 of 1, from 162 to 324: score -15.6, E = 0.0055 *->iklRpyQeeAierllesiekgelrlatglkdkdkkkrglivmATGsG kl yQ + l +++e+g +g+++ G G mKIAA1259 162 GKLKGYQLKGMNWLANLYEQG--------------INGILADEMGLG 194 KTltaakiliarllkkqqklkhg.riddskvLFlVprkdLleQaleeFtk KT+ +++ l a+l++ + ++ + ++L++ p +L + +eFt+ mKIAA1259 195 KTVQSIA-LLAHLAE---R-ENIwG----PFLIISPASTLNN-WHQEFTR 234 feskkkkefknpgvdkklkvltdnqkdsalegkskkndieiifttiQkLs f +k+k +g ++ + t + d + +++t++Q + mKIAA1259 235 FVPKFKVL-PYWGNPHDRSQKTLYTQDAPF---------HVVITSYQLVV 274 kalklgkendeeekskstesvvglrlavesleflldefdliIiDEaHrss +++k+ f + ++ +++ DEa + mKIAA1259 275 QDVKY---------------------------FQRVKWQYMVLDEA---Q 294 aktksakededatkl.e.v.yrkilekwelelnkkyfkpaflLGlTATPe a + ++ +v+++ +l+ f+ +L lT+TP+ mKIAA1259 295 ALK-----------SsSsVrWKILLQ----------FQCRNRLLLTGTPI 323 r<-* mKIAA1259 324 Q 324 DEAD: domain 1 of 1, from 176 to 330: score -30.8, E = 0.077 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->ptpiQaeaipaileneGfalredvlssggmdrlvlqApTGSGKTlaf + + ++ i+ il d + + GKT mKIAA1259 176 ANLY-EQGINGIL-------A-DEM--------G------LGKTVQS 199 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx llPilygqrllkgpksarggksqgggknergfkidspqalvlaPTreLae + + ++ + l+++P L + mKIAA1259 200 IALLA--HLAERENIW--------------------GPFLIISPASTL-N 226 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx QiyeelkkllkilalsplgvnellrrigtglrvavlslyGGsslkdqldk ++++e++++ + + +vl + G+ + q+ mKIAA1259 227 NWHQEFTRFVP--------------------KFKVLPYWGNPHDRSQKTL 256 RF x xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx l.rgkreskggpdIvvgTPgrLldllrngrinikievssertgklklknl +++ + ++v++ ++ + + k + mKIAA1259 257 YtQ-----DAPFHVVITSYQLVVQDV-------------------KYFQR 282 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx khlkllVlDEahrlldmghgFgedleeilrrlprneplraqllgtilHqk +++++VlDEa l + ++ +l+ r mKIAA1259 283 VKWQYMVLDEAQ-ALKS--SSSVRWKILLQFQ-----CR----------- 313 RF xxxxxxxxxxxxxxxxxxxx pniQtllfSATlpprevedl<-* +ll++ T++ + ++l mKIAA1259 314 ---NRLLLTGTPIQNTMAEL 330 SNF2_N: domain 1 of 1, from 167 to 461: score 358.8, E = 5.9e-104 *->YQleGvnWLislyknlvkkendslglggILADEMGLGKTlQtIslla YQl+G nWL++ly++ g++gILADEMGLGKT+Q+I+lla mKIAA1259 167 YQLKGMNWLANLYEQ---------GINGILADEMGLGKTVQSIALLA 204 ylkelkpktekrigpfLvVcPlStldnWlnEfekwapddlnivvyygdgn +l e +++ gpfL++ P+Stl+nW Ef +++p +++++y g++ mKIAA1259 205 HLAERENIW----GPFLIISPASTLNNWHQEFTRFVP-KFKVLPYWGNPH 249 srdqirkdellrnvlkdggrlkfdvlitsYeiirkNkLlkdkdeLkklei +r ++ + +d f+v+itsY+++ + d++ + + mKIAA1259 250 DR------SQKTLYTQDA---PFHVVITSYQLVVQ-----DVKYFQR--V 283 nwryvilDEGHHriKNedSklrkskalkklkhannRLlLTGTPlQNnLkE +w+y++lDE+ +K + S k l ++ ++nRLlLTGTP+QN ++E mKIAA1259 284 KWQYMVLDEA-QALKSSSSVR--WKILLQFQ-CRNRLLLTGTPIQNTMAE 329 lwsLlnFlmPgiFgsleeyindgksFdkwfnnpiaeggdsavLadkteaL lw+Ll+F+mP +F+s ++F++wf+++i +k+ mKIAA1259 330 LWALLHFIMPTLFDSH-------EEFNEWFSKDIESHA-----ENKS--- 364 rreknveeglklinrLhkilkpflLRRlKkdveksLpppeKteyvlfcel +++ ++ rLh ilkpf+LRR+Kkdve+ L++ K+e+ ++c+l mKIAA1259 365 --AIDEN----QLSRLHMILKPFMLRRIKKDVENELSD--KIEILTYCQL 406 sklQkelYkkflkg.eskdvkaindserreggkeknegksrllnlimqLr ++ Qk lY+ +++ ++ d+ + + + + s+l+nl mq+r mKIAA1259 407 TSRQKLLYQALKNKiSIEDLLQSSMGS-TQQAQN---TTSSLMNLVMQFR 452 KicNfHPyLf<-* K+cN HP Lf mKIAA1259 453 KVCN-HPELF 461 Helicase_C: domain 1 of 1, from 776 to 854: score 92.7, E = 7.4e-24 *->ll.epgikvarlhGglsqeeReeilekFrsgks..kvLvaTdvaarG ++ ++++ + rl+G+ + +eR++++++F++ + ++L++T+++++G mKIAA1259 776 YMvYRKHTYMRLDGSSKISERRDMVADFQTRNDifVFLLSTRAGGLG 822 lDipdvnlVInydlpwnpesyiQRiGRaGRaG<-* ++++++++VI+yd +wnp+++ Q+++Ra+R G mKIAA1259 823 INLTAADTVIFYDSDWNPTVDQQAMDRAHRLG 854 //