hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg10338/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1255  ( 176 res)   mbg10338

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
FYVE     FYVE zinc finger                                86.5    5.5e-22   1
Ank      Ankyrin repeat                                  16.3       0.72   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Ank        1/1      50    82 ..     1    33 []    16.3     0.72
FYVE       1/1     109   172 ..     1    77 []    86.5  5.5e-22

Alignments of top-scoring domains:
Ank: domain 1 of 1, from 50 to 82: score 16.3, E = 0.72
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      +G+T L lA ++gn+++++  +  G  l + ++   
   mKIAA1255    50    EGNTVLLLAYMKGNANLCRAIVRSGVRLGVNNN    82   

FYVE: domain 1 of 1, from 109 to 172: score 86.5, E = 5.5e-22
                   *->phWvpDeevsnCmrCgkpFtkltkRrHHCRaCGrifCgsCssktvll
                      p W + +    C++C  +F+ +t+R+HHCR+CGr+ C +Cs k++++
   mKIAA1255   109    PPWCDGSN---CYECTAKFG-VTTRKHHCRHCGRLLCHKCSTKEIPI 151  

                   pylgiaallkndviekpvRVCdsCydrlnk<-*
                    ++           +kpvRVC+ C+d l     
   mKIAA1255   152 IKFDL---------NKPVRVCNICFDVLTL    172  

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