hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mtj/mtj01938/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1252 ( 585 res) mtj01938 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Pyridoxal_deC Pyridoxal-dependent decarboxylase con -74.4 7.1e-09 1 Aminotran_1_2 Aminotransferase class I and II -106.1 0.5 1 Beta_elim_lyase Beta-eliminating lyase -128.7 0.33 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Pyridoxal_deC 1/1 155 473 .. 1 399 [] -74.4 7.1e-09 Beta_elim_lyase 1/1 193 474 .. 1 397 [] -128.7 0.33 Aminotran_1_2 1/1 156 518 .. 1 410 [] -106.1 0.5 Alignments of top-scoring domains: Pyridoxal_deC: domain 1 of 1, from 155 to 473: score -74.4, E = 7.1e-09 *->PgylrpllpeaaPikpes.lldileDieknimpGvthWhsPnfhayf g+ +++ a ++ e++l +l+ ++G +W+ P f mKIAA1252 155 -GSWQEGKASGAVYNGEPkLTELLVQ-----AYGEFTWSNPLHPDIF 195 pagnSypslLGdmLsdaINcngFtwessPAcTELEvvvmdwlgkmlglPk p g + ++ E+v m + mKIAA1252 196 P--------------------GLRKLEA------EIVRM-------TCS- 211 eflgssgsqGGGvlqgggSESnLlallAARtkwlrrmkargkpldeseIl f+g ++ G++++gg+ES+L a A R+++l ++g + mKIAA1252 212 LFNGGPD--SCGCVTSGGTESILMACKAYRDLAL----EKG--------I 247 gKLVlYtSdqaHsSvmeKaakiagVktdnlrlipsdedngkmrgddLeka ++ +++ + aH ++ Kaa ++g k + + + + n + ++++ ++a mKIAA1252 248 KTPEIVAPESAHAAF-DKAAHYFGMK---IVRVALKK-NMEVDVQAMKRA 292 IeedkerGLiPffVcAT..lGTTvsgaFDnlqelgdicaklgietGydlW I + + Vc T+++ g D+++e+++++++ y ++ mKIAA1252 293 ISRNTAM-----LVCSTpqF---PHGVMDPVPEVAKLAVR------YKIP 328 lHVDAAyaGsAfIcPefRh.....plewlfGiEraDSisfnPHKwmlvll lHVDA ++G f+ + + + + + +++f++ + Sis+ HK++ ++ mKIAA1252 329 LHVDACLGG--FLIVFMEKagyplEKPFDFRVKGVTSISADTHKYGYAPK 376 dCsalwvKdksaLqdalsvnpeYLkhndkqsdvavDfktwqIplSRgnrf + s + ++ + + v ++ + ++ + +++ SR + mKIAA1252 377 GSSVVMYSNEKYRTYQFFVGADWQG-------GVYASPSIAG--SR-PGG 416 riLKlWfvlRsyGveglqnhIrehvelAkyfedlvrkdgrdFeivadper i+ W++l +G g+ + + A + +++++ + +i ++ mKIAA1252 417 IIAACWAALMHFGENGYVEATKQIIKTARFLKSELENIKN-IFIFG--DP 463 nlglVcFrlK<-* l+ ++ mKIAA1252 464 QLSVIALGSN 473 Beta_elim_lyase: domain 1 of 1, from 193 to 474: score -128.7, E = 0.33 *->DLrSDtVTgpTpAMreamWaaAevGDdvYGgDptvnrLedrvaelfG D + p ++Le+++ ++ mKIAA1252 193 DI---------------F--------------PGLRKLEAEIVRMT- 209 keaalF.........vpsGTmANqlalmahc.q........rgeevicge + lF++++++ + v+sG + +++++++ + ++ +++ + e+++ e mKIAA1252 210 --CSLFnggpdscgcVTSG-GTESILMACKAyRdlalekgiKTPEIVAPE 256 pGdvvlaHihfdEtGghaelYtgGaqpvplpgeeaDtqahPFKGkldled + aH fd ++h + G + v + + d+++ mKIAA1252 257 S-----AHAAFD-KAAH-YF---GMKIVRVALKKN--------MEVDVQA 288 leaairphggDiHfpptglislEn..ThnsaGGqvvpleelreiraiAre ++ai + ++ l++ + + +h++ ++ + e++++A + mKIAA1252 289 MKRAISRNTA-------MLVCSTPqfPHGV-------MDPVPEVAKLAVR 324 hGiplHlDGAR......laNAAYFIKqREpGY.edvalgvivkEitWKsy ++iplH D++ ++ + + A GY+ + + vk t mKIAA1252 325 YKIPLHVDACLggflivFMEKA--------GYpLEKPFDFRVKGVT---- 362 aDsvsmclsKglgaPvG.svLagsddEeLfevrtrvVpfEGFvTYGGLaG s s K + aP G+sv+ s + mKIAA1252 363 --SISADTHKYGYAPKGsSVVMYSNE------------------------ 386 RDMeALAiGLrEgldedfIakArrq..rk...........yLGGgmRQaG +++ q + + +++ ++ ++G R G mKIAA1252 387 -------------------KYRTYQffVGadwqggvyaspSIAGS-RPGG 416 vlaAePaGGHAVFvDAkkfLPhiPqeqFPAQALaveLYleaGlrALeeg. ++aA + +++ g+ mKIAA1252 417 IIAA------------------------------------CWAALMHFGe 430 ..WvarlgrdhanArqLaeglellrlaiprpvyTntnmvfvaea<-* ++ v+ ++ ++Ar L+ +le ++ ++ ++ +++ ++ mKIAA1252 431 ngYVEATKQIIKTARFLKSELENIKNIFIFGDPQLSVIALGSND 474 Aminotran_1_2: domain 1 of 1, from 156 to 518: score -106.1, E = 0.5 *->kdkinLgsneylgdagkpptlpavakAekeayGctealaggtlnlYg + + + +s++ + ++ + + +ayG t+ + + mKIAA1252 156 SWQEGKASGAVYNG-----EPK-LTELLVQAYG------EFTWSNPL 190 ptdGlpelrealA.......kflggarspvlklkreaavvfssGagalie +d+ p lr+ A+ + + +++g +++ +++sG ++ i+ mKIAA1252 191 HPDIFPGLRKLEAeivrmtcSLFNG--------GPDSCGCVTSGGTESIL 232 alifllrlnpgda..........ilvpaPtyasyirifrlaggevvrypl +++ + r d +++ ++++i++p+ +a+++ ++ + g+++vr++l mKIAA1252 233 MACKAYR----DLalekgiktpeIVAPESAHAAFDKAAHYFGMKIVRVAL 278 yssnnfhlDfdaLeaalkeapegniktKvvlhtsPhNPtGtvltleelek + +n+++D++a+++a+++ t +++ +P P G+ + +e+ k mKIAA1252 279 K--KNMEVDVQAMKRAISR------NTAMLVCSTPQFPHGVMDPVPEVAK 320 ladlakehnilllvDEAYagfvfGsldedavsvGrGiaE........... l a +++i l vD +gf +++ +++ E++ + + ++ + mKIAA1252 321 L---AVRYKIPLHVDACLGGFLIVFMEKAGYPL-----Ekpfdfrvkgvt 362 ............................ralleegpnnksdlllvvgsfS + + ++++ + +++++ ++++ +++ + + ++ mKIAA1252 363 sisadthkygyapkgssvvmysnekyrtYQFFVGADW------------- 399 KafGlaGlRvGyilgnaedaesaavisqlrklarpfysnPsthgqaaaaa G G ++++ + ++ ++ aa+ a mKIAA1252 400 -----QG---GVYASPS-------------IAGSR-----PGGIIAACWA 423 aLsdsllvasWekeleemrqrikerrdyLrdgLeaikglpgglsvlpsqa aL ++ + e ++i++ +++L+++Le ik +++ ++q mKIAA1252 424 ALMHFGEN-----GYVEATKQIIKTARFLKSELENIKN---IFIFGDPQL 465 gfflltgldpeepfesakelaqvdrLleevgvyvtpgsspgvPkgpgwlR ++ l d ++ rL + +++ p ++ mKIAA1252 466 SVIALGSNDFD----------IY-RLSNMMSAKGWNFNYLQF---PRSIH 501 itvtAggteeeleelleai<-* +++ ++ + +++++ + mKIAA1252 502 FCI--TLVHTRKRVAIQFL 518 //