hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/meh/meh00539/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1251 ( 1900 res) meh00539 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SPEC Spectrin repeats 193.0 2.8e-53 10 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SPEC 1/10 233 330 .. 1 104 [] 45.4 7.5e-09 SPEC 2/10 333 433 .. 1 104 [] 29.2 0.00058 SPEC 3/10 810 921 .. 1 104 [] -6.2 31 SPEC 4/10 928 1057 .. 1 104 [] 3.5 4.1 SPEC 5/10 1075 1183 .. 1 104 [] 40.7 1.9e-07 SPEC 6/10 1200 1308 .. 1 104 [] 25.6 0.0067 SPEC 7/10 1353 1461 .. 1 104 [] -0.5 9.7 SPEC 8/10 1468 1578 .. 1 104 [] 45.4 7.3e-09 SPEC 9/10 1585 1691 .. 1 104 [] 46.7 3e-09 SPEC 10/10 1698 1800 .. 1 104 [] 25.1 0.01 Alignments of top-scoring domains: SPEC: domain 1 of 10, from 233 to 330: score 45.4, E = 7.5e-09 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea + lr + el++W+ee++ l+ ++g +Dl+sve +l+ +q + + mKIAA1251 233 EGNLRFVYELLSWVEEMQMKLERAEWG--NDLPSVELQLETQQHIHT 277 elaaheervdalnelgeqLieesghpdaeeIeerleeLnerWeeLlelae +++ + +v++ ++ ++ ++ ++e l +L++++ +L+e + mKIAA1251 278 SVEELGSSVKEARLYEGKMSQN---FHTSYVET-LGKLETQYCKLKETSS 323 eRrqkLe<-* R ++L+ mKIAA1251 324 FRMRHLQ 330 SPEC: domain 2 of 10, from 333 to 433: score 29.2, E = 0.00058 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea ++F + a ++ Wl+ ke+ d+ ++ +++ a+ + +l mKIAA1251 333 HKFVSRATAELIWLNGKEEEELACDWS--DSNPNISAKKTYFSELTM 377 elaaheervdalnelgeqLieesghpdaeeIeerleeLnerWeeLlelae el+ +++ + l++++e L e +hp+++++e+ ++++++ + ++l+ mKIAA1251 378 ELEGKQDVFRFLQDTAEVLSLE-NHPAKQTVEAYSAAVQSQLQWMKQLCL 426 eRrqkLe<-* +q+ + mKIAA1251 427 CVEQHVK 433 SPEC: domain 3 of 10, from 810 to 921: score -6.2, E = 31 *->qqFlrdadeleaWleeke.qllssedlgeskDlesveallk...... r ++++e ++ e +l + e ++ Dl+++e+ + ++ mKIAA1251 810 DVIVRSMQDAELLVKGYEiKLSQEEAVP--ADLSALESHRTtlqhwl 854 .kHqaleaelaaheervdalnelgeqLiee..sghpdaeeIeerleeLne + ++ + e++ + ++ +eqL ++ + d e +e+ +L+e mKIAA1251 855 sDVKDKNSVFSVLDEEITKAKKVAEQLRHPasEPNLDLERYQEKGSQLQE 904 rWeeLlelaeeRrqkLe<-* rW+++ +++e R+ e mKIAA1251 905 RWHRVIAQLETRQSEVE 921 SPEC: domain 4 of 10, from 928 to 1057: score 3.5, E = 4.1 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea + + + l++W+ee+ ++ + + +g + D + ++l ++ +l a mKIAA1251 928 RDYRACHGTLIKWIEETTAQQEMMKPGQAEDSRVLSEQLSQQTELFA 974 elaaheervdalnelgeqLieesghpdaeeIeerl............... e++ ++ ++d++++ +q ++++ + + ++++++++++++ mKIAA1251 975 EIERNQTKLDQCQKFSQQYSTIVKDYELQLMTYKAfvesqqkspgkrrrm 1024 ...........eeLnerWeeLlelaeeRrqkLe<-* ++++ +++ +L++r+ +L l+ + + mKIAA1251 1025 isssdaitqefMDLRTRYTALVTLTTQHVKYIS 1057 SPEC: domain 5 of 10, from 1075 to 1183: score 40.7, E = 1.9e-07 *->qqFlrdadeleaWleeke..qllssedlgeskDlesveallkkHqal q+ +++++l+ W++ ++++ +++ +++e+ + ++q l mKIAA1251 1075 QEHVEKVKDLLGWVSTLArnTQGTTTSSH-TSASADIEKAILEQQVL 1120 eaelaaheervdalnelgeqLiee....sghpdaeeIeerleeLnerWee +el++++e+v++ +++ + ++++++++ ++ ++e+I e+l+ Ln+ +++ mKIAA1251 1121 AEELTTKKEQVSEAIKTSQIFLAKhghkLSEGEKEQISEQLRVLNKTYHD 1170 LlelaeeRrqkLe<-* L++ ++++ q+L+ mKIAA1251 1171 LCDGSANQLQQLQ 1183 SPEC: domain 6 of 10, from 1200 to 1308: score 25.6, E = 0.0067 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallk...kHqa ++++++l +W++ +e++l+ g + +++ al+++++ +++ mKIAA1251 1200 DTCHKKLEDLCNWVGQAERALERHQGG--ASRQELPALQQnqsDLKD 1244 leaelaaheervdalnelgeqLiee....sghpdaeeIeerleeLnerWe l+ +++ h ++ + + e ++ee++++ ++ + +++e+l++ +e++e mKIAA1251 1245 LQGDIQSHSTSFATAVKDIEGFLEEnqtkLSPQELTALREKLHQAKEQYE 1294 eLlelaeeRrqkLe<-* L+e+++ ++ Le mKIAA1251 1295 VLQERTRVAQKELE 1308 SPEC: domain 7 of 10, from 1353 to 1461: score -0.5, E = 9.7 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallk....kHq q l ++++ ek++l++++ + D+ +v + l+++ + + mKIAA1251 1353 QASLPGMEQFSGACLEKQTLAATDGH---VDVNQVPETLDrqyeLMK 1396 aleaelaaheervdalnelgeqLiee....sghpdaeeIeerleeLnerW a +el +++ + ++ ++ ++++++++ +++ ++++e+l eL+e++ mKIAA1251 1397 ARHQELLSQQQNFIVATQSAQSFLDQhshnLTPEERQKLQEKLGELKEQY 1446 eeLlelaeeRrqkLe<-* ++ l+++e+ ++ + mKIAA1251 1447 AASLARSEAELKQTQ 1461 SPEC: domain 8 of 10, from 1468 to 1578: score 45.4, E = 7.3e-09 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea q+Fl+d +e+e+Wl+ e l s+ g ++e++++llk++ + + mKIAA1251 1468 QKFLQDHKEFENWLQQSENELDSMHKG-GSSPEALNSLLKRQGSFSE 1513 elaaheervdalnelgeqLiee........sghpdaeeIeerleeLnerW ++ h+ + ++ g++ +e +++ +++++ + + e+l++ er+ mKIAA1251 1514 DVISHKGDLRFVTISGQKVLETennfeegqEPSATRNLVNEKLKDATERY 1563 eeLlelaeeRrqkLe<-* L+ ++ + + +L mKIAA1251 1564 TTLHSKCIRLGSHLS 1578 SPEC: domain 9 of 10, from 1585 to 1691: score 46.7, E = 3e-09 *->qqFlrdadeleaWleeke...qllssedlgeskDlesveallkkHqa qqF++ ad l aW+ e + l s+ ++ D+ ++++l ++ mKIAA1251 1585 QQFQSSADSLQAWVLTCEasvGKLLSDTVA--SDPGVLQQQLATTKQ 1629 leaelaaheervdalnelgeqLiee..sghpdaeeIeerleeLnerWeeL l++ela+h+ v++l++++ +L++ +++ d I+e + + +r+++L mKIAA1251 1630 LQEELAEHQVPVEKLQKAAHDLLDIegEPALDCRPIQETTDSISSRFQNL 1679 lelaeeRrqkLe<-* ++eR + L+ mKIAA1251 1680 SCSLDERSALLQ 1691 SPEC: domain 10 of 10, from 1698 to 1800: score 25.1, E = 0.01 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea q ++ ++ l++ ++e eq l+ + ++ s + +++ l l++ mKIAA1251 1698 QSVQESMESLLQSIREVEQNLERDQVA-SLSSGVIQEALANNMKLKQ 1743 elaaheervdalnelgeqLieesghpdaeeIeerleeLnerWeeLlelae ++a ++ +++a +++ +++e + a ++ +l+eL +r+++L+ + + mKIAA1251 1744 DIARQKSSLEATHDMVTRFMETADSNSASVLQGKLAELSQRFQQLQLQQQ 1793 eRrqkLe<-* e++ L+ mKIAA1251 1794 EKESNLK 1800 [output cut off at A = 10 top alignments] //