hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg07525/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1250 ( 1693 res) mbg07525 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- KAP_NTPase KAP family P-loop domain 573.0 1.9e-168 1 Ank Ankyrin repeat 274.8 1.1e-78 9 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Ank 1/9 21 53 .. 1 33 [] 41.4 2e-08 Ank 2/9 54 86 .. 1 33 [] 28.3 0.00017 Ank 3/9 87 119 .. 1 33 [] 33.8 3.9e-06 Ank 4/9 120 152 .. 1 33 [] 23.0 0.007 Ank 5/9 153 185 .. 1 33 [] 45.4 1.3e-09 Ank 6/9 186 218 .. 1 33 [] 26.7 0.00055 Ank 7/9 219 251 .. 1 33 [] 25.0 0.0018 Ank 8/9 252 284 .. 1 33 [] 37.1 4.1e-07 Ank 9/9 285 320 .. 1 33 [] 14.6 1.5 KAP_NTPase 1/1 358 853 .. 1 513 [] 573.0 1.9e-168 Alignments of top-scoring domains: Ank: domain 1 of 9, from 21 to 53: score 41.4, E = 2e-08 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+T+L++A+++g+++vv+lLls+GA++ ++ mKIAA1250 21 GGWTALMWACYKGRTDVVELLLSHGANPSVTGL 53 Ank: domain 2 of 9, from 54 to 86: score 28.3, E = 0.00017 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* + P+ +Aa rg++++v lLl++GA +n d+ mKIAA1250 54 YSVYPIIWAAGRGHADIVHLLLQNGAKVNCSDK 86 Ank: domain 3 of 9, from 87 to 119: score 33.8, E = 3.9e-06 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G TPL +Aa++g+le+vk Ll GAd++ mKIAA1250 87 YGTTPLVWAARKGHLECVKHLLAMGADVDQEGA 119 Ank: domain 4 of 9, from 120 to 152: score 23.0, E = 0.007 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* + +T+L +A++ g+++ vk+ l++ ++n++d+ mKIAA1250 120 NSMTALIVAVKGGYTQSVKEILKRNPNVNLTDK 152 Ank: domain 5 of 9, from 153 to 185: score 45.4, E = 1.3e-09 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* dG+T+L++A++ g++e+v++Ll++G +n+ d+ mKIAA1250 153 DGNTALMIASKEGHIEIVQDLLDAGTYVNIPDR 185 Ank: domain 6 of 9, from 186 to 218: score 26.7, E = 0.00055 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+T L A++ g++e+v+ Ll++ Ad++++ mKIAA1250 186 SGDTVLIGAVRGGHVEIVRALLQKYADIDIRGQ 218 Ank: domain 7 of 9, from 219 to 251: score 25.0, E = 0.0018 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* d T+L +A+++gn+ +v++ l++ d + ++ mKIAA1250 219 DNKTALYWAVEKGNATMVRDILQCNPDTEICTK 251 Ank: domain 8 of 9, from 252 to 284: score 37.1, E = 4.1e-07 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* dG+TPL A ++ n+evv+lLl++GA + a+d+ mKIAA1250 252 DGETPLIKATKMRNIEVVELLLDKGARVSAVDK 284 Ank: domain 9 of 9, from 285 to 320: score 14.6, E = 1.5 *->dGfTPLHlAalrgnlevvklLls...qGAdlnaqdd<-* G+TPLH+A++ + ++++lLl +++ G l ++ mKIAA1250 285 KGDTPLHVAIRGRSRRLAELLLRnpkDGRLLYRPNK 320 KAP_NTPase: domain 1 of 1, from 358 to 853: score 573.0, E = 1.9e-168 *->rkpyaenlakllvepslveppivigiyGaWGsGKTsllnlledelke ++ y+++la++l+ep++ +ppi++g+y++WGsGK++ll++lede+k+ mKIAA1250 358 YDLYSSALADILSEPTM-QPPICVGLYAQWGSGKSFLLKKLEDEMKT 403 fArdwleppi.lsFlvvLhilLliGtvvll.Twsv..vlgisisv.lLiL fA+++ ep++++s+l+v++ lLl+G l+ ++v++ l+i++s+++L+L mKIAA1250 404 FAGQQIEPLFqFSWLIVFLTLLLCGGLGLVfAFTVdtNLAIAVSLsFLAL 453 iYfl.vvVkfl.rr.rd.weWaysi.ngLaRklgRlrliLqvafchppea +Y++ +v++f++r+++++w+Wa+ ++++LaR++g+l+l+ +++f++ppe+ mKIAA1250 454 LYIFfIVIYFGgRQeGEsWNWAWALsTRLARHIGYLELLFKLMFVNPPEL 503 psqdsqakpeefiivkfdpWlfsgqddlvasllatladaLeeeasalatk p+q++ a p++f++ +++++++ g++ +a+++ e+ +l k mKIAA1250 504 PEQTTKALPVRFLFTDYNRLSSVGGETSLAEMI--------FEYLRL--K 543 lllgkkllslvigakigwkkkvalalaltglvalallvigagllavltig +l++ k ++kk+++l+ ++++l+++++++ g+ lla ++++ mKIAA1250 544 ILRV----------KRNGKKTCCLPSFIIFLFIVGCIIAGITLLAIFRVD 583 dveeeeeeeavnalkeasatlmGlliitiqhlwlkvt.slfnsqrkrlkr +vna+++++a+ +Gl+ ++++w++v +sl+nsqrkrl++ mKIAA1250 584 PK-----HLTVNAILISIASIVGLAFVLNCRTWWQVLdSLLNSQRKRLHS 628 AarsehkLklrglkkklqkeieelrtdikkaLdeFt.lqkrivvvIDDLD Aa++ hkLk++g++k+l+ e+e l++ ++k++d+Ft++q+r+vv+ID+LD mKIAA1250 629 AASKLHKLKSEGFMKVLKCEVE-LMARMAKTIDSFTqNQTRLVVIIDGLD 677 RcepeevvelLeavrllfdfphpnvvfILayDeeiikkAleknyggglse ce+++v+++L++vr+lf+ +++ I+a D++ii+kA+++n++++l++ mKIAA1250 678 ACEQDKVLQMLDTVRVLFSK--GPFIAIFASDPHIIIKAINQNLNSVLRD 725 sgidgqdYLeKiIqvpfrLpplglrelrrylmtavlvdalergtssedrd s+i+g+dY+++i+++p+ L++ gl+++r++l t+ +++ + + + mKIAA1250 726 SNINGHDYMRNIVHLPVFLNSRGLSNARKFLVTS-ATNGDISCSEATGVQ 774 eelvnkalqrrLSargw.gk.ldesesvkstgrsnls.Lasnlqraddln e+ ++ ++q++L + ++ ++++++++++t+r++++++ ++q+++dl+ mKIAA1250 775 EDADRRVSQNSL--GEMtKLgSKTALNRRDTYRRRQMqRTITRQMSFDLT 822 iildtedYksdlnPRelkRliNalkilyrll<-* ++l ted++sd++P++++Rl+N +++++rll mKIAA1250 823 KLLVTEDWFSDISPQTMRRLLNIVSVTGRLL 853 //