hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg08203/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1244  ( 1668 res)   mbg08203

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Sec7     Sec7 domain                                    193.8    1.6e-53   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Sec7       1/1      80   292 ..     1   226 []   193.8  1.6e-53

Alignments of top-scoring domains:
Sec7: domain 1 of 1, from 80 to 292: score 193.8, E = 1.6e-53
                   *->sknrkkllsegikkfnqkPkkGiqfLqekgflakevDdspqevAkfl
                      s++++++ s++++++++++++++++++++++ a e+D+ + +v+++ 
   mKIAA1244    80    SYGSRYSESNFSVDDQDLSRTEFDSCDQYSMAA-EKDSGRSDVSDIG 125  

                   ydseS.adadeseteglnkkaiGdyLgeshdefnrlvLhafvdlfdFsgk
                   +d++S a     ++e++ ++ iG++    ++ + +l L ++++ +++s++
   mKIAA1244   126 SDNCSlA-----DEEQTPRDYIGHRSL--RTAALSLKLLKNQEADQHSAR 168  

                   dldeALRefLesfrLPGEaQkIDRlleaFserYcecNpgvfskagkslsk
                    ++++L  +L ++++    +++D +l++F++++c  +++++ ++g+s+++
   mKIAA1244   169 LFIQSLEGLLPRLLALSSVEEVDSALQNFASTFCSGMMHSPGFDGGSSLS 218  

                   iqqllnaDaaYvLaYSlIMLNTDLHnpnvkkskakdiLvKMtkedFikNl
                   +q+l+naD+ Y++a++ ++LN++L + ++++  ++++ ++  +++F+k++
   mKIAA1244   219 FQMLMNADSLYTAAHCALLLNLKLSHGDYYR--KRPTVAPGMMKEFMKQV 266  

                   rginkeiddgedlprefLeelYdsIknnei<-*
                   + ++    +++ +++++LeelY+++ ++++   
   mKIAA1244   267 QTSG----VLMVFSQAWLEELYHQVLDRNM    292  

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