hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbg/mbg00704/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1239 ( 1174 res) mbg00704 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- WD40 WD40 repeats 50.9 1.6e-10 5 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- WD40 1/5 371 427 .. 1 46 [] 2.6 1.9e+02 WD40 2/5 430 469 .. 1 46 [] 21.1 0.16 WD40 3/5 695 734 .. 1 46 [] 22.5 0.061 WD40 4/5 779 817 .. 1 46 [] 6.5 46 WD40 5/5 818 857 .. 1 46 [] 1.6 2.7e+02 Alignments of top-scoring domains: WD40: domain 1 of 5, from 371 to 427: score 2.6, E = 1.9e+02 *->t.kllrtlkgHtgespVtsvafspdggss.............dspnl +k +++ + H++ +v++sp + +++ + ++ ++ +p+ mKIAA1239 371 GpKYCSIVPLHSS----MDVTYSPERLPLasshlhvteilptCNPST 413 lasgs.DgtirlWd<-* ++++ ++g+i Wd mKIAA1239 414 VLTALeNGSISTWD 427 WD40: domain 2 of 5, from 430 to 469: score 21.1, E = 0.16 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW t++llr ++ ++ +++++ s+d ++l+++ +++t+ ++ mKIAA1239 430 TrQLLRQITTAQS--VILGMKLSSDE------KYLVVATtNNTLLIY 468 d<-* d mKIAA1239 469 D 469 WD40: domain 3 of 5, from 695 to 734: score 22.5, E = 0.061 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW t+++l++l+ +g + + s+++ n+l+s s+ g + +W mKIAA1239 695 TgQCLASLQESSG--TIVKLVKSSHH------NMLLSLStSGVLSIW 733 d<-* d mKIAA1239 734 D 734 WD40: domain 4 of 5, from 779 to 817: score 6.5, E = 46 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW ++ +++k H+g V ++ ++g +l++++++ ++ ++W mKIAA1239 779 SgFIEAVFK-HEG--IVEHCVLTSTG------DLMVTSDdKSSQYVW 816 d<-* + mKIAA1239 817 H 817 WD40: domain 5 of 5, from 818 to 857: score 1.6, E = 2.7e+02 *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW t++ ++ + +++ + + +++ ++++s ++ + r+W mKIAA1239 818 TsSGENLFRINGQ--RISQLLITHND------QFVVSLCeENASRVW 856 d<-* mKIAA1239 857 R 857 //