hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg00704/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1239  ( 1174 res)   mbg00704

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
WD40     WD domain, G-beta repeat                        25.0     0.0017   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
WD40       1/3     432   469 ..     1    38 []    10.5       10
WD40       2/3     697   734 ..     1    38 []    12.7      5.4
WD40       3/3     780   817 ..     1    38 []     1.7  1.2e+02

Alignments of top-scoring domains:
WD40: domain 1 of 3, from 432 to 469: score 10.5, E = 10
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      ++l+ ++  +s +  ++ s d  ++l+ +  ++t+ i+d   
   mKIAA1239   432    QLLRQItTAQSVILGMKLSSD-EKYLVVATTNNTLLIYD    469  

WD40: domain 2 of 3, from 697 to 734: score 12.7, E = 5.4
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                      +cla+l+  ++++  +  s +  ++l+s S  g + iWd   
   mKIAA1239   697    QCLASLqESSGTIVKLVKSSH-HNMLLSLSTSGVLSIWD    734  

WD40: domain 3 of 3, from 780 to 817: score 1.7, E = 1.2e+02
                   *->eclavl.gHtspVtcvafspdsgpllasgSrDgtikiWd<-*
                        +     H++ V+ +      g l++++ +  + ++W+   
   mKIAA1239   780    GFIEAVfKHEGIVEHCVLTST-GDLMVTSDDKSSQYVWH    817  

//