hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/TIGRFAMs_HMM.LIB
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj02086/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1238  ( 455 res)   mfj02086

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
rimK_fam  rimK_fam: alpha-L-glutamate ligases, RimK f   568.6     4e-167   1
LysX_arch LysX_arch: Lysine biosynthesis enzyme LysX     -7.4    2.6e-09   1
glut_syn  glut_syn: glutathione synthase               -159.8     0.0074   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
rimK_fam    1/1      76   371 ..     1   321 []   568.6   4e-167
glut_syn    1/1     111   375 ..     1   322 []  -159.8   0.0074
LysX_arch   1/1     111   377 ..     1   289 []    -7.4  2.6e-09

Alignments of top-scoring domains:
rimK_fam: domain 1 of 1, from 76 to 371: score 568.6, E = 4e-167
                   *->KlailydiaireiyirlydekmLkeaaeergidykvvtppeivltfn
                      Kl++l+d++ire+y++++++++Lk++++e+++d+++v+++e vlt +
   mKIAA1238    76    KLWFLTDRRIREDYPQKEILRALKAKCCEEELDFRAVVMDEMVLTVE 122  

                   qPaafsIfykeprknkelalaeldvvivRigTPWvssfrglavlraLEsl
                   q      +++++r+++el+ a+++vv+vR++TPWv+s+++++vlr+LE++
   mKIAA1238   123 Q------GNLGLRISGELISAYPQVVVVRVPTPWVQSDSDITVLRHLEKM 166  

                   GvpviNssqaIlnagDKvlshqlLakaGvPlPrtgvagPQNFDREWspee
                   G++++N++qaIln+++K++++q+La++GvPlP+t+++g        ++e+
   mKIAA1238   167 GCRLMNRPQAILNCVNKFWTFQELAGHGVPLPDTFSYG--------GHEN 208  

                   alklieeigqlEfPvVlKpvfGSwGrlVsLarDkqaaetllehfeqlngp
                   ++k+i+e+++lEfP+V+K+++G++G++V+LarDk+++++l+++++++++ 
   mKIAA1238   209 FAKMIDEAEVLEFPMVVKNTRGHRGKAVFLARDKHHLADLSHLIRHEAP- 257  

                   qykvflvQEYIkPVkpggRDIRvfVVGdevvaAiyRiitsghwrtNlarG
                       +l+Q+YIk  +++gRD+Rv+VVG++vv+++ R++t+g++++N+++G
   mKIAA1238   258 ----YLFQKYIK--ESHGRDVRVIVVGGRVVGTMLRCSTDGRMQSNCSLG 301  

                   GkAepcslteeieeLAikAakalgldvaGiDlleskdrdDWgGLlVlEVN
                   G++++csl+e++++LAi+++++lg dv+GiDll+++d    g+++V+E+N
   mKIAA1238   302 GVGMMCSLSEQGKQLAIQVSNILGTDVCGIDLLMKDD----GSFCVCEAN 347  

                   anpeFknsvkttGvNIAgklldyi<-*
                   an++F++++k++++++Ag+++dy+   
   mKIAA1238   348 ANVGFIAFDKACNLDVAGIIADYA    371  

glut_syn: domain 1 of 1, from 111 to 375: score -159.8, E = 0.0074
                   *->LKVaflmDPIesikigkDttfalmeEAQkRGHelffyepgdLsvkn.
                         a++mD                 E+      +  +e g L ++ +
   mKIAA1238   111    ---AVVMD-----------------EM------VLTVEQGNLGLRIs 131  

                   .GrvfAraapvkvlpvqldddrWQVkqdWytlgekvrlaLkDeldvvlMR
                   +++  A  + v v+          V ++W + +++  + L          
   mKIAA1238   132 gELISAYPQVVVVR----------VPTPWVQ-SDSDITVLR--------- 161  

                   kDPPfdmeYiYaTyLLelaeptGtlViNsPqglRdaNEKLfalqFpkv..
                                     +e  G +  N Pq++ ++  K  +  F+ + +
   mKIAA1238   162 -----------------HLEKMGCRLMNRPQAILNCVNKFWT--FQELag 192  

                   ....iPPTLvTrdkaeIraFlaehgd....IvLKPLdGmGGeGIfRldpg
                   ++ + P+T     ++      +e +  + + v K   G  G  +f l  +
   mKIAA1238   193 hgvpLPDTFSYGGHENFAKMIDEAEVlefpMVVKNTRGHRGKAVF-LARD 241  

                   DpNlnsilEtltqlgrepvmaQrYlPeIkeGDKRILLidGePigyavaRi
                      l  ++  +  + ++p   Q+Y+ e    D R++ ++G+++g    R 
   mKIAA1238   242 KHHLADLS--HLIRHEAPYLFQKYIKESHGRDVRVIVVGGRVVG-TMLRC 288  

                   PaggEfRgNLAvGGrgeaqeLseRDrEIcatvaPeLkrrGLlFVGIDVI.
                    + g   +N   GG g   +Lse    ++ +v+  L  +     GID + 
   mKIAA1238   289 STDGRMQSNCSLGGVGMMCSLSEQGKQLAIQVSNILGTD---VCGIDLLm 335  

                   ...GgyLT...EvNVTSPTGirEIdrqkGvniaeqlidaiEkav<-*
                   +++G+    +   NV    G+   d+ +++++a+  +d+ + ++   
   mKIAA1238   336 kddGSFCVceaNANV----GFIAFDKACNLDVAGIIADYAASLL    375  

LysX_arch: domain 1 of 1, from 111 to 377: score -7.4, E = 2.6e-09
                   *->IaiLYDiiRldEKmLleeleklGlqvrviyvpelalpfgdlgikele
                       a++      dE  L  e   lGl    i ++el    +        
   mKIAA1238   111    -AVV-----MDEMVLTVEQGNLGL---RI-SGELISAYP-------- 139  

                   dldVaiiRn....VSqsRaLysAfllEavGvptINsshaiiacgDKifTt
                      V++ R +++ V     + + + lE  G    N++ ai+ c +K +T 
   mKIAA1238   140 --QVVVVRVptpwVQSDSDITVLRHLEKMGCRLMNRPQAILNCVNKFWTF 187  

                   lkLakaGvPtPrtyiafdrea.Alka..aEelGYPvVlKPviGSWGRlVs
                     La +GvP P+t+   + e+ A+ +++aE l +P V+K ++G  G+ V 
   mKIAA1238   188 QELAGHGVPLPDTFSYGGHENfAKMIdeAEVLEFPMVVKNTRGHRGKAVF 237  

                   kirDkdelesllEhkEvlggsqlklyyvQEfInK.PgRDIRvfVIGDeai
                   ++rDk  l   l h+     +    y++Q +I+ + gRD Rv+V+G++++
   mKIAA1238   238 LARDKHHLAD-LSHLIRHEAP----YLFQKYIKEsHGRDVRVIVVGGRVV 282  

                   aAIYRysePnhWrTNTArGGkAePckideeveeLAvKAaeAvGgevvgID
                   +   R s  +    N  +GG    c + e    LA+ ++ ++G  v gID
   mKIAA1238   283 GTMLRCSTDGRMQSNCSLGGVGMMCSLSEQGKQLAIQVSNILGTDVCGID 332  

                   IvEskrrqnDWgGlLVnEVNgvpEFKNtvrvTGVNVAeklveyavelvkk
                   ++   ++    g   V E N +  F  +  + + +VA+ +++ya++l+ +
   mKIAA1238   333 LLMK-DD----GSFCVCEANANVGFIAFDKACNLDVAGIIADYAASLLPA 377  

                   <-*
                      
   mKIAA1238     -     -    

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