hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp05109/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1237  ( 650 res)   mbp05109

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
EGF      Epidermal growth factor-like domain.            53.0      4e-11   3
EGF_CA   Calcium-binding EGF-like domain                 45.9    5.3e-09   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
EGF        1/3     257   292 ..     1    32 []    32.6  5.3e-05
EGF_CA     1/2     254   292 ..     1    34 []     2.7     0.78
EGF        2/3     297   332 ..     1    32 []    31.2  0.00014
EGF_CA     2/2     294   332 ..     1    34 []    51.2  1.4e-10
EGF        3/3     452   500 ..     1    32 []     5.0       92

Alignments of top-scoring domains:
EGF: domain 1 of 3, from 257 to 292: score 32.6, E = 5.3e-05
                   *->eCa..pCsnGgtEqnGtCi......sytC.CpgpGytg.rCe<-*
                       C  +pC ++     G+Ci + ++++y+C Cp p ++g++C    
   mKIAA1237   257    SCTvnPCLHD-----GKCIvdltgrGYRCvCP-PAWQGeNCS    292  

EGF_CA: domain 1 of 2, from 254 to 292: score 2.7, E = 0.78
                   *->DiDEC...pCqnGGptgtCi.N..vGSYrC.CppGyt.rnCe<-*
                       ++ C+ +pC + G   +Ci + +  +YrC Cpp +++ nC    
   mKIAA1237   254    PVNSCtvnPCLHDG---KCIvDltGRGYRCvCPPAWQgENCS    292  

EGF: domain 2 of 3, from 297 to 332: score 31.2, E = 0.00014
                   *->eCa..pCsnGgtEqnGtCi....sytC.CpgpGytg...rCe<-*
                      eC+++pC +      +tC ++ +s+tC+Cp  Gy+++++ C    
   mKIAA1237   297    ECLssPCPPL-----ATCNntqgSFTCrCP-VGYQLekgICN    332  

EGF_CA: domain 2 of 2, from 294 to 332: score 51.2, E = 1.4e-10
                   *->DiDEC...pCqnGGptgtCiN.vGSYrC.CppGyt...rnCe<-*
                      D++EC ++pC++ +   tC N+ GS++C+Cp Gy+  ++ C    
   mKIAA1237   294    DVNEClssPCPPLA---TCNNtQGSFTCrCPVGYQlekGICN    332  

EGF: domain 3 of 3, from 452 to 500: score 5.0, E = 92
                   *->eCa.............pCsnGgtEqnGtCi.........sytC..Cp
                      eC+++++  ++ ++   C+         C ++    ++  ++C+ C 
   mKIAA1237   452    ECDketsictdldgvaLCQ---------CKsgyfqfnkmDHSCraCE 489  

                   gpGytg...rCe<-*
                    +Gy++++++C    
   mKIAA1237   490 -DGYRLeneTCM    500  

//