hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp05109/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1237  ( 650 res)   mbp05109

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
EGF      EGF-like domain                                 45.4    1.3e-09   3
EGF_CA   Calcium binding EGF domain                      33.4    5.2e-06   2
EGF_2    EGF-like domain                                 15.6       0.39   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
EGF        1/3     258   291 ..     1    39 []    38.4  1.6e-07
EGF_2      1/1     258   291 ..     1    37 []    15.6     0.39
EGF        2/3     298   331 ..     1    39 []    16.4     0.47
EGF_CA     1/2     294   331 ..     1    55 []    47.5  2.9e-10
EGF        3/3     446   485 ..     1    39 []     6.3      4.6
EGF_CA     2/2     452   499 ..     1    55 []    -3.9      1.8

Alignments of top-scoring domains:
EGF: domain 1 of 3, from 258 to 291: score 38.4, E = 1.6e-07
                   *->CspnngpCsngGtCvdtpg..gytCeCppGdyfllytGkrC<-*
                      C+ n  pC+++G+C+    ++gy+C Cpp      ++G++C   
   mKIAA1237   258    CTVN--PCLHDGKCIVDLTgrGYRCVCPPA-----WQGENC    291  

EGF_2: domain 1 of 1, from 258 to 291: score 15.6, E = 0.39
                   *->C....CngshGtCvspngtstpcgkCvCdsgyedkyqGadC<-*
                      C+ ++C   +G+C+ +  t++   +CvC++     +qG  C   
   mKIAA1237   258    CtvnpCLH-DGKCIVD-LTGR-GYRCVCPPA----WQGENC    291  

EGF: domain 2 of 3, from 298 to 331: score 16.4, E = 0.47
                   *->CspnngpCsngGtCvdtpggytCeCppGdyfllytGkrC<-*
                      C +   pC   +tC++t+g++tC+Cp+G   ++     C   
   mKIAA1237   298    CLSS--PCPPLATCNNTQGSFTCRCPVG---YQLEKGIC    331  

EGF_CA: domain 1 of 2, from 294 to 331: score 47.5, E = 2.9e-10
                   *->DvDECatgtlhvCpDpdentvCvNtiGSFeCvarkdCpeGYeVpvse
                      Dv+EC +     C   +  ++C+Nt+GSF C+    Cp GY+     
   mKIAA1237   294    DVNECLS---SPC---PPLATCNNTQGSFTCR----CPVGYQ----- 325  

                   nnedgtnC<-*
                      + + C   
   mKIAA1237   326 --LEKGIC    331  

EGF: domain 3 of 3, from 446 to 485: score 6.3, E = 4.6
                   *->CspnngpCsng.GtCvdtpggytCeCppGdyfllytGkr.C<-*
                      C      C+  + +C+d++g   C+C+ G yf   +++++C   
   mKIAA1237   446    CKRKSPECDKEtSICTDLDGVALCQCKSG-YFQFNKMDHsC    485  

EGF_CA: domain 2 of 2, from 452 to 499: score -3.9, E = 1.8
                   *->DvDECatgtlhvCpDpdentvCvNtiGSFe.......CvarkdCpeG
                         EC+  t  +C D d  + C+ + G F+ ++ +++C+   +C++G
   mKIAA1237   452    ---ECDKET-SICTDLDGVALCQCKSGYFQfnkmdhsCR---ACEDG 491  

                   YeVpvsennedgtnC<-*
                   Y+        ++++C   
   mKIAA1237   492 YR-------LENETC    499  

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