hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm04158/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1236  ( 1309 res)   mpm04158

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
KISc     Kinesin motor, catalytic domain. ATPase.      -136.1    1.3e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
KISc       1/1       3   153 ..     1   404 []  -136.1  1.3e-05

Alignments of top-scoring domains:
KISc: domain 1 of 1, from 3 to 153: score -136.1, E = 1.3e-05
                   *->kgnIrVavRvdrdRPlnkrEksekakeespsvvtvtvtvnFtFDkVF
                        + r   R        ++E++++   +s++++t          +V+
   mKIAA1236     3    ALAARSTSRA------GCGEEARR---SSHMLFTL---------HVY 31   

                   WrydvddpsasQedVFeevaaPLvdsaldGYNvaTIFAYGQTGSGKTyTM
                              Q+ V e ++          + +                M
   mKIAA1236    32 -----------QYRV-EKCG----------QGG----------------M 43   

                   sGtptdpgilsndladitpdepGiIPRaledlFekidefsVkvSylEIYN
                   sG                                                
   mKIAA1236    44 SGGR---------------------------------------------- 47   

                   EkirDLLspspenSksrGkhakqsskkkLrirEdkngnrhdapkLtrlrg
                           ++                                        
   mKIAA1236    48 --------SR---------------------------------------- 49   

                   qggvyVvGLtevsVsSaeevlellerGnknRtvaaTkmNeeSSRSHaiFt
                                       l+l+++G+   +++                
   mKIAA1236    50 --------------------LHLIDLGSCDAAIG---------------- 63   

                   itleqkeklepiadektesstnegteqiksskLnLVDLAGSERaskTgse
                                                             R + +   
   mKIAA1236    64 ------------------------------------------RGGEAS-- 69   

                   aeGdRLkEaqnINkSLlaLGnVInALaddshdsaeseatkqaggkssHIP
                           ++   +SL+aLG VI AL++                + +H+P
   mKIAA1236    70 --------GGPLCLSLSALGSVILALVN----------------GAKHVP 95   

                   YRDSKLTrLLQdSL.GGNsKTlMIanvSPsssnyeETlsTLrFAsRaksI
                   YRD  LT+LL++SL + N++T+MIa++S s+ + +ETlsT + A+R+   
   mKIAA1236    96 YRDHRLTMLLRESLaTTNCRTIMIAHISDSPAHHAETLSTVQLAARIHRL 145  

                   knkpavne<-*
                   + k+ ++    
   mKIAA1236   146 RRKKGKHA    153  

//