hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj26053/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1234  ( 208 res)   mfj26053

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PAS      PAS domain                                      53.1    3.5e-11   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PAS        1/1      17    83 ..     1    68 []    53.1  3.5e-11

Alignments of top-scoring domains:
PAS: domain 1 of 1, from 17 to 83: score 53.1, E = 3.5e-11
                   *->erlraileslpdgiivldldGrilyaNpaaeellGyspeeliGksll
                      ++ r +lesl+ + +v++++G i ya++++ ++lG+ + ++++++++
   mKIAA1234    17    QEGRLLLESLNGFALVVSAEGMIFYASATIVDYLGFHQTDVMHQNIY 63   

                   elihpedrlleevqe.lqrlla<-*
                   ++ih +dr  + + ++l  +++   
   mKIAA1234    64 DYIHVDDR--QDFCRqLHWAMD    83   

//