hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj26053/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1234  ( 208 res)   mfj26053

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PAS      PAS fold                                        32.8    7.9e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PAS        1/1      17   134 ..     1   123 []    32.8  7.9e-06

Alignments of top-scoring domains:
PAS: domain 1 of 1, from 17 to 134: score 32.8, E = 7.9e-06
                   *->edlrailesnlpdgifvvDvedGrilyvNaaaeellGlsreeviGks
                      ++ r +les l  + +vv  + G i+y++a++ + lG+ + +v++++
   mKIAA1234    17    QEGRLLLES-LNGFALVVS-AEGMIFYASATIVDYLGFHQTDVMHQN 61   

                   lldlipeeddaeclvaelllqaleqgee.rgv......evsfrvsgqrfl
                   ++d+i+ +d+++  + ++l++a+   +  +g++++ +++ ++  + +r  
   mKIAA1234    62 IYDYIHVDDRQD--FCRQLHWAMDPPQVvFGQsphadtDNTVLGKLLRA- 108  

                   vrdgrpihvevraspvrdaggeilgflgvlrDi<-*
                     + + + +  + s ++ +     +f++++r+    
   mKIAA1234   109 --QEGGKGLPSEYSAFLTR-----CFICRVRCL    134  

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