hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp17192/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1233  ( 747 res)   mbp17192

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
IGc2     Immunoglobulin C-2 Type                         75.0      9e-18   2
IG       Immunoglobulin                                  53.0      4e-11   2
TSP1     Thrombospondin type 1 repeats                   35.2    8.9e-06   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
IGc2       1/2     260   325 ..     1    56 []    14.7     0.16
IG         1/2     254   337 ..     1    58 []    13.7      5.5
IGc2       2/2     367   429 ..     1    56 []    60.4  2.3e-13
IG         2/2     361   442 ..     1    58 []    39.4  4.8e-07
TSP1       1/3     482   539 ..     1    66 []    22.8    0.031
TSP1       2/3     541   600 ..     1    66 []    20.5    0.054
TSP1       3/3     657   712 ..     1    66 []     7.6      1.5

Alignments of top-scoring domains:
IGc2: domain 1 of 2, from 260 to 325: score 14.7, E = 0.16
                   *->leGqsVtLtCp.asgdpvpnItWlk.gkplp........sgstLtik
                      ++ + + + C   + + +++ tW+k+g  l+++ +   +  +  +i+
   mKIAA1233   260    KSTEIINILCSlITPSKEATYTWTKdGALLQpsvkiildETGKMQIR 306  

                   nvsleDsGlYtCvArNsvg<-*
                   n ++   G+Y+C++ ++ g   
   mKIAA1233   307 NPTRKEQGIYECSVASHLG    325  

IG: domain 1 of 2, from 254 to 337: score 13.7, E = 5.5
                   *->pp.vtvkeGesvtLtC.as......titWy.................
                         +  k  e +++ C+  ++++  t+tW++++   +++ +   + +
   mKIAA1233   254    NTvYITKSTEIINILCsLItpskeaTYTWTkdgallqpsvkiildet 300  

                   ..LtI.nvtpeDsesgGtYtCaat...sgsasseqgttLtVl<-*
                   ++++I+n t+  +   G+Y C + ++ + +++s  +  L+ +   
   mKIAA1233   301 gkMQIrNPTRKEQ---GIYECSVAshlGSDVES--SLVLYAE    337  

IGc2: domain 2 of 2, from 367 to 429: score 60.4, E = 2.3e-13
                   *->leGqsVtLtCpasgdpvpnItWlk.gkplp......sgstLtiknvs
                          +Vt+ Cp+ g p pn+tWlk+g +l+++ +   +++L ++++s
   mKIAA1233   367    ALQANVTIHCPVKGVPQPNVTWLKrGGSLSdnvsllFNGSLLLQSAS 413  

                   leDsGlYtCvArNsvg<-*
                   le +G+Y C+A+N+ g   
   mKIAA1233   414 LENEGTYICTATNALG    429  

IG: domain 2 of 2, from 361 to 442: score 39.4, E = 4.8e-07
                   *->pp.vtvkeGesvtLtC.as.....titWy.................L
                       ++v++ +  +vt++C++++ + +++tW++++++ +++ +   +++L
   mKIAA1233   361    GGtVEAALQANVTIHCpVKgvpqpNVTWLkrggslsdnvsllfngsL 407  

                   tI.nvtpeDsesgGtYtCaat....sgsasseqgttLtVl<-*
                    ++++++e++   GtY C+at+  ++ +a+s  g +L  +   
   mKIAA1233   408 LLqSASLENE---GTYICTATnalgKAVATS--GLRLLER    442  

TSP1: domain 1 of 3, from 482 to 539: score 22.8, E = 0.031
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                       +e + W+ CS +tCG  g    + +R R     c+++ ++  ++ +
   mKIAA1233   482    FWEPGNWTHCS-ATCGPLGV---RLQRPR-----CVMASGQ--EVSE 517  

                   epCs.......EtrpCntqpnLqpCp<-*
                   + C +++++   ++ Cn +    +Cp   
   mKIAA1233   518 ALCGphrkplaGFQSCNIR----DCP    539  

TSP1: domain 2 of 3, from 541 to 600: score 20.5, E = 0.054
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                       + +s WS+CS v+CG+G     + +R+ +    c+   +    ng 
   mKIAA1233   541    RWFTSVWSECS-VSCGEG-----FHSRQVT----CKQTKA----NGT 573  

                   epCs............EtrpCntqpnLqpCp<-*
                    +  +++   +++++   +pC+ +    pC    
   mKIAA1233   574 VQVVspracapkdrplGRKPCSIR----PCV    600  

TSP1: domain 3 of 3, from 657 to 712: score 7.6, E = 1.5
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                      ++  ++W pC+ + CG+G     +++R+       c +         
   mKIAA1233   657    CWRVGPWKPCT-AVCGRG-----FQSRKV-----DCIH--------T 684  

                   epCs.............EtrpCntqpnLqpCp<-*
                   ++C    ++   + ++   r C+++     C+   
   mKIAA1233   685 GSCKivadrycvqvkpaAWRHCFGP----SCD    712  

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