hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp17192/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1233  ( 747 res)   mbp17192

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ig       Immunoglobulin domain                           62.3      1e-14   2
I-set    Immunoglobulin I-set domain                     40.1      5e-08   1
V-set    Immunoglobulin V-set domain                     21.4     0.0044   1
TSP_1    Thrombospondin type 1 domain                    15.7     0.0055   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ig         1/2     262   320 ..     1    65 []    24.8    0.002
ig         2/2     369   424 ..     1    65 []    37.5  3.1e-07
I-set      1/1     354   440 ..     1    97 []    40.1    5e-08
V-set      1/1     357   442 ..     1   130 []    21.4   0.0044
TSP_1      1/3     483   538 ..     1    55 []     4.3     0.13
TSP_1      2/3     544   599 ..     1    55 []    23.1  0.00071
TSP_1      3/3     661   700 ..     1    55 []     4.9     0.11

Alignments of top-scoring domains:
ig: domain 1 of 2, from 262 to 320: score 24.8, E = 0.002
                   *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq
                       e  ++ Cs   + ++++t+tW+++g  l+++v++  +e++      
   mKIAA1233   262    TEIINILCSLI-TPSKEATYTWTKDGAlLQpSVKIILDETGK----- 302  

                   tsLtitnvtpeDggtYtCvv<-*
                      +i+n t+   g+Y C v   
   mKIAA1233   303 --MQIRNPTRKEQGIYECSV    320  

ig: domain 2 of 2, from 369 to 424: score 37.5, E = 3.1e-07
                   *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq
                         vt+ C v+  g p+++vtWl+ g++l + v+  +  +       
   mKIAA1233   369    QANVTIHCPVK--GVPQPNVTWLKRGGsLSdNVSLLFNGS------- 406  

                   tsLtitnvtpeDggtYtCvv<-*
                     L +++++ e +gtY C++   
   mKIAA1233   407 --LLLQSASLENEGTYICTA    424  

I-set: domain 1 of 1, from 354 to 440: score 40.1, E = 5e-08
                   *->PkFtqkp.kdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvll
                       + + + +  ve++    ++  C V+G P+P V+W+K G  ls    
   mKIAA1233   354    NHLSVVVgGTVEAALQANVTIHCPVKGVPQPNVTWLKRGGSLSD--- 397  

                   psdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV
                       ++  ++g     +L  + +  + +G+Y C+AtN  G+a a+  L  
   mKIAA1233   398 ---NVSLLFNG-----SLLLQSASLENEGTYICTATNALGKAVATSGLRL 439  

                   q<-*
                       
   mKIAA1233   440 L    440  

V-set: domain 1 of 1, from 357 to 442: score 21.4, E = 0.0044
                   *->qstvtqepprLLLASLfWptsvtvaeGgsvtLpCtysGtfddsssss
                      +++v +               v +a+ ++vt++C ++    +     
   mKIAA1233   357    SVVVGG--------------TVEAALQANVTIHCPVK----GV---- 381  

                   gtgsvyWyrqqppGekpeliiisyytyysysegngtvserfkgrvrfsgn
                      +v+W + +                            +++++v++  n
   mKIAA1233   382 PQPNVTWLK-RGG--------------------------SLSDNVSLLFN 404  

                   pskgdfsLtIsnlqlsDsGtYyCa..........gggtrLtVl<-*
                   +s     L +++++l+ +GtY C  ++  ++    +g rL  +   
   mKIAA1233   405 GS-----LLLQSASLENEGTYICTatnalgkavaTSGLRLLER    442  

TSP_1: domain 1 of 3, from 483 to 538: score 4.3, E = 0.13
                   *->spWseWSpCSVTCG.kGirtRqRvcnspaPqkkggepCtgdvqe..l
                       + + W+ CS TCG+ G+r  + +c++ + q + +e + g+++ +  
   mKIAA1233   483    WEPGNWTHCSATCGpLGVRLQRPRCVMASGQ-EVSEALCGPHRKplA 528  

                   eteaCdmmdkC<-*
                    ++ C + + C   
   mKIAA1233   529 GFQSC-NIRDC    538  

TSP_1: domain 2 of 3, from 544 to 599: score 23.1, E = 0.00071
                   *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkgge.......pCtgd
                        +s WS+CSV+CG+G  +Rq +c++++   ++g  +  +++ C  +
   mKIAA1233   544    --TSVWSECSVSCGEGFHSRQVTCKQTK---ANGTvqvvsprACAPK 585  

                   vqeleteaCdmmdkC<-*
                   +++l  ++C + ++C   
   mKIAA1233   586 DRPLGRKPC-SIRPC    599  

TSP_1: domain 3 of 3, from 661 to 700: score 4.9, E = 0.11
                   *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete
                         ++W pC+  CG G ++R+  c ++       ++C+  +     +
   mKIAA1233   661    ---GPWKPCTAVCGRGFQSRKVDCIHT-------GSCKIVAD----R 693  

                   aCdmmdkC<-*
                    C  + k    
   mKIAA1233   694 YC-VQVKP    700  

//