hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj00035/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1230  ( 990 res)   mfj00035

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SAM      Sterile alpha motif.                           159.5    3.4e-43   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SAM        1/3     624   691 ..     1    67 []    59.3  4.8e-13
SAM        2/3     696   762 ..     1    67 []    66.3  3.8e-15
SAM        3/3     784   856 ..     1    67 []    38.0  1.3e-06

Alignments of top-scoring domains:
SAM: domain 1 of 3, from 624 to 691: score 59.3, E = 4.8e-13
                   *->vs.wspesVaeWLesigleqYadnFrkngidgeelllltseedLkel
                      + +w+ e+V+ WL   gl+ Y +  + + i+g+ ll+ +++++ kel
   mKIAA1230   624    FAkWTKEQVCSWLAEQGLGSYLSSGKHWIISGQTLLQASQQDLEKEL 670  

                   GitllGhRkkIlsaiqklkeq<-*
                   Gi+   hRkk++ a+q l ++   
   mKIAA1230   671 GIKHSLHRKKLQLALQALGSE    691  

SAM: domain 2 of 3, from 696 to 762: score 66.3, E = 3.8e-15
                   *->vs.wspesVaeWLesigleqYadnFrkngidgeelllltseedLkel
                      + + +++ V +WL+ igl+qY+ +F + ++dg++l+ +t  +dL++l
   mKIAA1230   696    YGkLDFNWVTRWLDDIGLPQYKTQFDEGRVDGRMLHYMT-VDDLLSL 741  

                   GitllGhRkkIlsaiqklkeq<-*
                   ++ ++ h++ I +aiq l+ +   
   mKIAA1230   742 KVVSVLHHLSIKRAIQVLRIN    762  

SAM: domain 3 of 3, from 784 to 856: score 38.0, E = 1.3e-06
                   *->vs.wspesVaeWLesigleqYadnFrkngidgeellllt.....see
                      v +w+++ V eWL+s +l++Ya+n+r  g++g +++l+ + + ++++
   mKIAA1230   784    VQqWTNHRVMEWLRSVDLAEYAPNLRGSGVHGGLMVLEPrfnveTMA 830  

                   dLkelGitllGhRkkIlsaiqklkeq<-*
                    L+++  +++  R+ ++  ++ l      
   mKIAA1230   831 QLLNIPPNKTLLRRHLATHFNLLIGA    856  

//