hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg20753/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1227  ( 1074 res)   mbg20753

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ZnF_C2H2 zinc finger                                     77.1    2.2e-18   8
BTB      Broad-Complex, Tramtrack and Bric a brac        75.0    9.3e-18   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BTB        1/1      38   134 ..     1   114 []    75.0  9.3e-18
ZnF_C2H2   1/8     557   580 ..     1    23 []    17.6      1.8
ZnF_C2H2   2/8     586   609 ..     1    23 []    15.9      5.1
ZnF_C2H2   3/8     681   703 ..     1    23 []    22.1    0.079
ZnF_C2H2   4/8     758   778 ..     1    23 []    -0.0  3.2e+02
ZnF_C2H2   5/8     785   808 ..     1    23 []    17.5      1.9
ZnF_C2H2   6/8     917   937 ..     1    23 []     9.0       30
ZnF_C2H2   7/8     945   967 ..     1    23 []    18.4        1
ZnF_C2H2   8/8    1051  1073 ..     1    23 []    23.0    0.041

Alignments of top-scoring domains:
BTB: domain 1 of 1, from 38 to 134: score 75.0, E = 9.3e-18
                   *->cDvtlvvggdlggdnaegkkfhasqHkavLaacrrdSpyFkalfes.
                      cDv l+vg+         +kf+a  Hk vLaa+   S+yF++lf+++
   mKIAA1227    38    CDVLLIVGD---------QKFRA--HKNVLAAS---SEYFQSLFTNk 70   

                   .......ieldDeallievspeaFralLnflYt.kldlpeedvenveelL
                   +++ ++  +ld+        p+aF+ +Ln++Y+++l++ +    ++  + 
   mKIAA1227    71 eneaqtvFQLDF------CEPDAFDNVLNYIYSsSLFVEKG---SLAAVQ 111  

                   elAdfldSYGqip.lvelCeefllknl<-*
                   el   l    +i  l+  + ++ +      
   mKIAA1227   112 ELGYSL----GISfLTNIVAKAPQAPF    134  

ZnF_C2H2: domain 1 of 8, from 557 to 580: score 17.6, E = 1.8
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      +kC++ C k f+s   L rH+   H   
   mKIAA1227   557    FKCKH-CLKIFRSTaGLHRHVNmYH    580  

ZnF_C2H2: domain 2 of 8, from 586 to 609: score 15.9, E = 5.1
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      y C+i C+k+f++      H +++H   
   mKIAA1227   586    YACDI-CHKRFHTNfKVWTHCQtQH    609  

ZnF_C2H2: domain 3 of 8, from 681 to 703: score 22.1, E = 0.079
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C + Cgk ++  +++k+H+++H   
   mKIAA1227   681    YICAY-CGKAYRFLsQFKQHIKMH    703  

ZnF_C2H2: domain 4 of 8, from 758 to 778: score -0.0, E = 3.2e+02
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                       +Cp+ C+ +f s+   ++H       
   mKIAA1227   758    TVCPY-CSLRFFSPaLKQEHED--    778  

ZnF_C2H2: domain 5 of 8, from 785 to 808: score 17.5, E = 1.9
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      ++C + C ++f+s  +  rH+ +vH   
   mKIAA1227   785    LTCLE-CMRTFKSSfSIWRHQVeVH    808  

ZnF_C2H2: domain 6 of 8, from 917 to 937: score 9.0, E = 30
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C++ Cgk f+ +++L+rH+      
   mKIAA1227   917    WPCEK-CGKMFTAHkQLERHQE--    937  

ZnF_C2H2: domain 7 of 8, from 945 to 967: score 18.4, E = 1
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C++ C k f++   L  H ++H   
   mKIAA1227   945    FICHV-CYKAFRTNfRLWSHFQTH    967  

ZnF_C2H2: domain 8 of 8, from 1051 to 1073: score 23.0, E = 0.041
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      + C++ C+++f+++ +L  H ++H   
   mKIAA1227  1051    FMCKL-CHRTFKTAfSLWSHEQTH    1073 

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