hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg20753/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1227  ( 1074 res)   mbg20753

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-C2H2  Zinc finger, C2H2 type                         109.6    6.2e-29   9
BTB      BTB/POZ domain                                 103.3    4.7e-27   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
BTB        1/1      28   134 ..     1   135 []   103.3  4.7e-27
zf-C2H2    1/9     557   580 ..     1    24 []    22.2    0.013
zf-C2H2    2/9     586   609 ..     1    24 []    14.0      3.6
zf-C2H2    3/9     681   703 ..     1    24 []    29.4  8.4e-05
zf-C2H2    4/9     732   754 ..     1    24 []     4.4       37
zf-C2H2    5/9     758   780 ..     1    24 []    10.6      9.3
zf-C2H2    6/9     785   808 ..     1    24 []    11.6      7.5
zf-C2H2    7/9     917   940 ..     1    24 []    24.6   0.0024
zf-C2H2    8/9     945   967 ..     1    24 []    21.4    0.022
zf-C2H2    9/9    1051  1073 ..     1    24 []    24.7   0.0022

Alignments of top-scoring domains:
BTB: domain 1 of 1, from 28 to 134: score 103.3, E = 4.7e-27
                   *->lnelreqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal
                      lne r++g+lcDV L vgd        +kf+AHK vLaa+S+YF++l
   mKIAA1227    28    LNEERLKGQLCDVLLIVGD--------QKFRAHKNVLAASSEYFQSL 66   

                   FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks
                   Ft++       e+  ++ +  l++ +p++f ++L++iY++ l+++     
   mKIAA1227    67 FTNK-------ENEAQT-VFQLDFCEPDAFDNVLNYIYSSSLFVE----- 103  

                   PssckseenvedlLalAadllqipslvdkCeefliksl<-*
                         ++ ++++ +l+   l i +l++++ +  +      
   mKIAA1227   104 ------KGSLAAVQELG-YSLGISFLTNIVAKAPQAPF    134  

zf-C2H2: domain 1 of 9, from 557 to 580: score 22.2, E = 0.013
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      +kC+ +C k F++ + L+rH ++ H   
   mKIAA1227   557    FKCK-HCLKIFRSTAGLHRHVNMyH    580  

zf-C2H2: domain 2 of 9, from 586 to 609: score 14.0, E = 3.6
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      y C+ +C+k+F ++    +H +t+H   
   mKIAA1227   586    YACD-ICHKRFHTNFKVWTHCQTqH    609  

zf-C2H2: domain 3 of 9, from 681 to 703: score 29.4, E = 8.4e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y C  +Cgk+++  s++k+H+++H   
   mKIAA1227   681    YICA-YCGKAYRFLSQFKQHIKMH    703  

zf-C2H2: domain 4 of 9, from 732 to 754: score 4.4, E = 37
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y C   C+ + s+  +  +H r +   
   mKIAA1227   732    YPCR-LCNAKLSSLLEQGNHERLC    754  

zf-C2H2: domain 5 of 9, from 758 to 780: score 10.6, E = 9.3
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                       +Cp +C  +F +++  + H  ++   
   mKIAA1227   758    TVCP-YCSLRFFSPALKQEHEDRC    780  

zf-C2H2: domain 6 of 9, from 785 to 808: score 11.6, E = 7.5
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                       +C  +C ++F+++ +  rH+   H   
   mKIAA1227   785    LTCL-ECMRTFKSSFSIWRHQVEvH    808  

zf-C2H2: domain 7 of 9, from 917 to 940: score 24.6, E = 0.0024
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                        C+ +Cgk+F+ +++L+rH+   +   
   mKIAA1227   917    WPCE-KCGKMFTAHKQLERHQELlC    940  

zf-C2H2: domain 8 of 9, from 945 to 967: score 21.4, E = 0.022
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      + C+ +C k+F+++  L +H +tH   
   mKIAA1227   945    FICH-VCYKAFRTNFRLWSHFQTH    967  

zf-C2H2: domain 9 of 9, from 1051 to 1073: score 24.7, E = 0.0022
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+  C+++F++  +L +H +tH   
   mKIAA1227  1051    FMCK-LCHRTFKTAFSLWSHEQTH    1073 

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