hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbg/mbg04842/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1225 ( 1401 res) mbg04842 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- LRR_PS Leucine-rich repeat, plant-specific subfamil 141.4 9.3e-38 15 LRR_TYP Leucine-rich repeats, typical (most populate 121.6 8.9e-32 11 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. 68.5 8.4e-16 1 LRR_BAC Leucine-rich repeats, bacterial type 31.6 0.00011 9 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- LRR_BAC 1/9 70 89 .. 1 20 [] 4.8 1.5e+02 LRR_PS 1/15 71 92 .. 1 24 [] 7.1 1.4e+02 LRR_TYP 1/11 73 93 .. 1 24 [] 16.3 4.2 LRR_BAC 2/9 93 112 .. 1 20 [] 4.4 1.7e+02 LRR_PS 2/15 93 115 .. 1 24 [] 14.1 18 LRR_BAC 3/9 116 135 .. 1 20 [] 7.4 68 LRR_PS 3/15 116 138 .. 1 24 [] 14.6 14 LRR_TYP 2/11 116 139 .. 1 24 [] 15.2 5.8 LRR_PS 4/15 139 161 .. 1 24 [] 4.9 2.7e+02 LRR_PS 5/15 162 184 .. 1 24 [] 6.3 1.8e+02 LRR_TYP 3/11 162 184 .. 1 24 [] 7.6 49 LRR_BAC 4/9 185 204 .. 1 20 [] 7.3 70 LRR_TYP 4/11 185 207 .. 1 24 [] 13.1 11 LRR_PS 6/15 185 207 .. 1 24 [] 12.7 27 LRR_BAC 5/9 208 227 .. 1 20 [] 9.0 41 LRR_TYP 5/11 208 230 .. 1 24 [] 17.8 1.6 LRR_PS 7/15 208 230 .. 1 24 [] 18.0 1.3 LRR_TYP 6/11 231 253 .. 1 24 [] 7.9 45 LRR_PS 8/15 231 253 .. 1 24 [] 15.3 8.9 LRR_PS 9/15 254 276 .. 1 24 [] 9.7 65 LRR_TYP 7/11 254 277 .. 1 24 [] 17.8 1.6 LRR_PS 10/15 277 299 .. 1 24 [] 7.5 1.3e+02 LRR_BAC 6/9 300 319 .. 1 20 [] 4.1 1.8e+02 LRR_PS 11/15 300 322 .. 1 24 [] 5.0 2.7e+02 LRR_TYP 8/11 300 323 .. 1 24 [] 12.1 14 LRR_BAC 7/9 323 342 .. 1 20 [] 5.6 1.2e+02 LRR_PS 12/15 323 345 .. 1 24 [] 10.4 54 LRR_PS 13/15 346 368 .. 1 24 [] 10.9 46 LRR_TYP 9/11 346 369 .. 1 24 [] 9.1 32 LRR_BAC 8/9 370 388 .. 1 20 [] 1.6 3.9e+02 LRR_PS 14/15 369 391 .. 1 24 [] 15.6 7.2 LRR_TYP 10/11 370 391 .. 1 24 [] 0.3 3.8e+02 LRR_BAC 9/9 392 411 .. 1 20 [] 9.1 40 LRR_PS 15/15 392 414 .. 1 24 [] 17.1 2.4 LRR_TYP 11/11 392 414 .. 1 24 [] 12.5 12 PDZ 1/1 1319 1399 .. 1 80 [] 68.5 8.4e-16 Alignments of top-scoring domains: LRR_BAC: domain 1 of 9, from 70 to 89: score 4.8, E = 1.5e+02 *->PpsLkeLnvsnNrLteLPeL<-* +L+eL+ + N+++eLP mKIAA1225 70 EKTLEELYLDANQIEELPKQ 89 LRR_PS: domain 1 of 15, from 71 to 92: score 7.1, E = 1.4e+02 *->LtsLqvLdLsnNnLsGeIPsslgn<-* + L++L+L N++ e+P++l+n mKIAA1225 71 -KTLEELYLDANQIE-ELPKQLFN 92 LRR_TYP: domain 1 of 11, from 73 to 93: score 16.3, E = 4.2 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L+eL+L+ Nq+++LP ++F++ mKIAA1225 73 ---LEELYLDANQIEELPKQLFNC 93 LRR_BAC: domain 2 of 9, from 93 to 112: score 4.4, E = 1.7e+02 *->PpsLkeLnvsnNrLteLPeL<-* +sL +L +N Lt+LP+ mKIAA1225 93 CQSLHKLSLPDNDLTTLPAS 112 LRR_PS: domain 2 of 15, from 93 to 115: score 14.1, E = 18 *->LtsLqvLdLsnNnLsGeIPsslgn<-* ++sL L L +N L+ ++P+s+ n mKIAA1225 93 CQSLHKLSLPDNDLT-TLPASIAN 115 LRR_BAC: domain 3 of 9, from 116 to 135: score 7.4, E = 68 *->PpsLkeLnvsnNrLteLPeL<-* +L+eL+vs N + e+Pe+ mKIAA1225 116 LINLRELDVSKNGIQEFPEN 135 LRR_PS: domain 3 of 15, from 116 to 138: score 14.6, E = 14 *->LtsLqvLdLsnNnLsGeIPsslgn<-* L +L++Ld+s N + e+P+++ n mKIAA1225 116 LINLRELDVSKNGIQ-EFPENIKN 138 LRR_TYP: domain 2 of 11, from 116 to 139: score 15.2, E = 5.8 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L nLreLd s N +++ P+++ ++ mKIAA1225 116 LINLRELDVSKNGIQEFPENIKNC 139 LRR_PS: domain 4 of 15, from 139 to 161: score 4.9, E = 2.7e+02 *->LtsLqvLdLsnNnLsGeIPsslgn<-* ++ L++++ s N +s ++P+ +++ mKIAA1225 139 CKVLTIVEASVNPIS-KLPDGFSQ 161 LRR_PS: domain 5 of 15, from 162 to 184: score 6.3, E = 1.8e+02 *->LtsLqvLdLsnNnLsGeIPsslgn<-* L +L++L+L++ L +P+++g+ mKIAA1225 162 LLNLTQLYLNDAFLE-FLPANFGR 184 [output cut off at A = 10 top alignments] //