hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg04842/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1225 ( 1401 res) mbg04842 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- LRR_1 Leucine Rich Repeat 141.6 1.4e-38 16 PDZ PDZ domain (Also known as DHR or GLGF) 63.4 4.8e-15 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- LRR_1 1/16 48 71 .. 1 25 [] 4.0 4.3e+02 LRR_1 2/16 72 94 .. 1 25 [] 13.4 5.3 LRR_1 3/16 95 117 .. 1 25 [] 11.5 20 LRR_1 4/16 118 140 .. 1 25 [] 16.7 0.55 LRR_1 5/16 141 163 .. 1 25 [] 4.0 4.4e+02 LRR_1 6/16 164 186 .. 1 25 [] 11.0 30 LRR_1 7/16 187 209 .. 1 25 [] 11.7 17 LRR_1 8/16 210 232 .. 1 25 [] 14.8 2 LRR_1 9/16 233 255 .. 1 25 [] 8.6 75 LRR_1 10/16 256 278 .. 1 25 [] 10.4 39 LRR_1 11/16 279 301 .. 1 25 [] 5.1 2.9e+02 LRR_1 12/16 302 324 .. 1 25 [] 10.3 39 LRR_1 13/16 325 347 .. 1 25 [] 13.6 4.9 LRR_1 14/16 348 370 .. 1 25 [] 3.3 5.6e+02 LRR_1 15/16 371 393 .. 1 25 [] 11.5 20 LRR_1 16/16 394 416 .. 1 25 [] 17.3 0.36 PDZ 1/1 1312 1396 .. 1 82 [] 63.4 4.8e-15 Alignments of top-scoring domains: LRR_1: domain 1 of 16, from 48 to 71: score 4.0, E = 4.3e+02 *->nLeeLdLsgCNpslsgslpps.l.glp<-* ++++Ld s+C sl+ +p++ + + mKIAA1225 48 TVTTLDYSHC--SLE-QVPKEiFtFEK 71 LRR_1: domain 2 of 16, from 72 to 94: score 13.4, E = 5.3 *->nLeeLdLsgCNpslsgslppsl.glp<-* +LeeL+L+ N +++ +lp+ l +++ mKIAA1225 72 TLEELYLDA-N-QIE-ELPKQLfNCQ 94 LRR_1: domain 3 of 16, from 95 to 117: score 11.5, E = 20 *->nLeeLdLsgCNpslsgslppsl.glp<-* +L +L+L + N l+ +lp+s+ +l mKIAA1225 95 SLHKLSLPD-N-DLT-TLPASIaNLI 117 LRR_1: domain 4 of 16, from 118 to 140: score 16.7, E = 0.55 *->nLeeLdLsgCNpslsgslppsl.glp<-* nL+eLd+s N ++ ++p+++++++ mKIAA1225 118 NLRELDVSK-N-GIQ-EFPENIkNCK 140 LRR_1: domain 5 of 16, from 141 to 163: score 4.0, E = 4.4e+02 *->nLeeLdLsgCNpslsgslppsl.glp<-* L++++ s N ++s lp++++ l mKIAA1225 141 VLTIVEASV-N-PIS-KLPDGFsQLL 163 LRR_1: domain 6 of 16, from 164 to 186: score 11.0, E = 30 *->nLeeLdLsgCNpslsgslppsl.glp<-* nL+ L+L++ l+ lp++++ l+ mKIAA1225 164 NLTQLYLND-A-FLE-FLPANFgRLT 186 LRR_1: domain 7 of 16, from 187 to 209: score 11.7, E = 17 *->nLeeLdLsgCNpslsgslppsl.glp<-* +L++L+L+ N +l + lp+ + l+ mKIAA1225 187 KLQILELRE-N-QL-KMLPKTMnRLT 209 LRR_1: domain 8 of 16, from 210 to 232: score 14.8, E = 2 *->nLeeLdLsgCNpslsgslppsl.glp<-* +Le LdL++ N +++ ++p+ l+ l+ mKIAA1225 210 QLERLDLGS-N-EFT-EVPEVLeQLS 232 LRR_1: domain 9 of 16, from 233 to 255: score 8.6, E = 75 *->nLeeLdLsgCNpslsgslppsl.glp<-* L+e ++g N +l+ +p +++l+ mKIAA1225 233 GLREFWMDG-N-RLT-FIPGFIgSLR 255 LRR_1: domain 10 of 16, from 256 to 278: score 10.4, E = 39 *->nLeeLdLsgCNpslsgslppsl.glp<-* +L++Ld+s N +++ ++++++ + mKIAA1225 256 QLTYLDVSK-N-NIE-MVEEGIsTCE 278 LRR_1: domain 11 of 16, from 279 to 301: score 5.1, E = 2.9e+02 *->nLeeLdLsgCNpslsgslppsl.glp<-* n + Ls+ N sl+ lp+ +++l+ mKIAA1225 279 NPQDFLLSS-N-SLQ-QLPETIgSLK 301 LRR_1: domain 12 of 16, from 302 to 324: score 10.3, E = 39 *->nLeeLdLsgCNpslsgslppsl.glp<-* n+++L ++ N +l lp+s++gl+ mKIAA1225 302 NVTTLKIDE-N-QLM-YLPDSIgGLR 324 LRR_1: domain 13 of 16, from 325 to 347: score 13.6, E = 4.9 *->nLeeLdLsgCNpslsgslppsl.glp<-* ++eeLd s N +++ lp+s++ l+ mKIAA1225 325 SIEELDCSF-N-EIE-ALPSSIgQLT 347 LRR_1: domain 14 of 16, from 348 to 370: score 3.3, E = 5.6e+02 *->nLeeLdLsgCNpslsgslppsl.glp<-* n ++ ++ N +l+ lpp++++ + mKIAA1225 348 NMRTFAADH-N-YLQ-QLPPEIgNWK 370 LRR_1: domain 15 of 16, from 371 to 393: score 11.5, E = 20 *->nLeeLdLsgCNpslsgslppsl.glp<-* n+++L L++ N +l+ +lp++ ++++ mKIAA1225 371 NITVLFLHC-N-KLE-TLPEEMgDMQ 393 LRR_1: domain 16 of 16, from 394 to 416: score 17.3, E = 0.36 *->nLeeLdLsgCNpslsgslppsl.glp<-* +L++++Ls+ N +l + lp s+ +l+ mKIAA1225 394 KLKVINLSD-N-RL-KNLPFSFtKLQ 416 PDZ: domain 1 of 1, from 1312 to 1396: score 63.4, E = 4.8e-15 *->evtlekevkrgglGfsikggsdk..........givvsevlpGsgaA v++e k lGfsi+gg +++++ +++++gi+v++v+p g+A mKIAA1225 1312 RVRVE---KDPELGFSISGGVGGrgnpfrpdddGIFVTRVQPE-GPA 1354 eagGrLkeGDqIlsvNGqdvenlsheravlalkgsggsevtLtil<-* + L++GD+I++ NG ++ n++h +av +lk ++ v L i mKIAA1225 1355 SKL--LQPGDKIIQANGYSFINIEHGQAVSLLKTFHN-AVDLIIV 1396 //