hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj51380/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1223  ( 600 res)   mfj51380

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ANK      ankyrin repeats                                220.1      2e-61   8

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ANK        1/8      19    48 ..     1    30 []    27.3   0.0021
ANK        2/8      52    81 ..     1    30 []    28.9  0.00071
ANK        3/8      85   114 ..     1    30 []    32.6  5.3e-05
ANK        4/8     118   147 ..     1    30 []    19.4      0.5
ANK        5/8     151   180 ..     1    30 []    34.0    2e-05
ANK        6/8     184   213 ..     1    30 []    25.8   0.0059
ANK        7/8     217   246 ..     1    30 []    36.0    5e-06
ANK        8/8     250   280 ..     1    30 []    19.2      0.6

Alignments of top-scoring domains:
ANK: domain 1 of 8, from 19 to 48: score 27.3, E = 0.0021
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                       G+TpLH+Aa +g+  ++++L++ ga  n+   
   mKIAA1223    19    AGWTPLHMAAFEGHRLICEALIEQGARTNE    48   

ANK: domain 2 of 8, from 52 to 81: score 28.9, E = 0.00071
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      dGr p+ lA ++g++++v++Ll+++ +i+    
   mKIAA1223    52    DGRIPFILASQEGHYDCVQILLENKSNIDQ    81   

ANK: domain 3 of 8, from 85 to 114: score 32.6, E = 5.3e-05
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      dGr++L +Aa +g+ ++v+lL ++gad+n+   
   mKIAA1223    85    DGRNALRVAALEGHRDIVELLFSHGADVNY    114  

ANK: domain 4 of 8, from 118 to 147: score 19.4, E = 0.5
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      dGr  L++ a +++l +++++l++ga+++a   
   mKIAA1223   118    DGRPTLYILALENQLTMAEYFLENGANVEA    147  

ANK: domain 5 of 8, from 151 to 180: score 34.0, E = 2e-05
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      +GrT+LH+ +  g++e+v+ L+   ad+na   
   mKIAA1223   151    EGRTALHVSCWQGHVEMVRVLIACHADVNA    180  

ANK: domain 6 of 8, from 184 to 213: score 25.8, E = 0.0059
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      + r++L  Aa  g+++vv+lL+++ga ++    
   mKIAA1223   184    EKRSALQSAAWQGHVKVVQLLIEHGAVVDH    213  

ANK: domain 7 of 8, from 217 to 246: score 36.0, E = 5e-06
                   *->dGrTpLHlAaengnlevvklLldkgadina<-*
                      +G T+L +Aa++g+++vv+ Ll++gad+n    
   mKIAA1223   217    QGATALCIAAQEGHVDVVQVLLEHGADPNH    246  

ANK: domain 8 of 8, from 250 to 280: score 19.2, E = 0.6
                   *->dGrTpLHlAaengnlevvklLldkga.dina<-*
                       GrT++ +Aa+ng+  ++klL ++ga+++n    
   mKIAA1223   250    FGRTAMRVAAKNGHSQIIKLLEKYGAsSLNG    280  

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