hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mfj/mfj51380/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1223 ( 600 res) mfj51380 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Ank Ankyrin repeat 234.8 1.2e-66 8 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Ank 1/8 19 51 .. 1 33 [] 39.2 9.7e-08 Ank 2/8 52 84 .. 1 33 [] 26.3 0.0007 Ank 3/8 85 117 .. 1 33 [] 37.2 3.9e-07 Ank 4/8 118 150 .. 1 33 [] 17.1 0.42 Ank 5/8 151 183 .. 1 33 [] 41.6 1.7e-08 Ank 6/8 184 216 .. 1 33 [] 25.6 0.0012 Ank 7/8 217 249 .. 1 33 [] 41.6 1.8e-08 Ank 8/8 250 282 .. 1 33 [] 15.6 1.1 Alignments of top-scoring domains: Ank: domain 1 of 8, from 19 to 51: score 39.2, E = 9.7e-08 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+TPLH+Aa+ g+ +++ L++qGA n d+ mKIAA1223 19 AGWTPLHMAAFEGHRLICEALIEQGARTNEIDN 51 Ank: domain 2 of 8, from 52 to 84: score 26.3, E = 0.0007 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* dG+ P lA++ g++++v+ Ll++ +++ + mKIAA1223 52 DGRIPFILASQEGHYDCVQILLENKSNIDQRGY 84 Ank: domain 3 of 8, from 85 to 117: score 37.2, E = 3.9e-07 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* dG+ +L +Aal g+ ++v+lL s+GAd+n +d mKIAA1223 85 DGRNALRVAALEGHRDIVELLFSHGADVNYKDA 117 Ank: domain 4 of 8, from 118 to 150: score 17.1, E = 0.42 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* dG+ L + al ++l +++++l++GA++ a d mKIAA1223 118 DGRPTLYILALENQLTMAEYFLENGANVEASDA 150 Ank: domain 5 of 8, from 151 to 183: score 41.6, E = 1.7e-08 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G+T+LH+ + g++e+v+ L+ + Ad+na d+ mKIAA1223 151 EGRTALHVSCWQGHVEMVRVLIACHADVNAADN 183 Ank: domain 6 of 8, from 184 to 216: score 25.6, E = 0.0012 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* + +++L Aa g+++vv+lL+++GA ++++ + mKIAA1223 184 EKRSALQSAAWQGHVKVVQLLIEHGAVVDHTCN 216 Ank: domain 7 of 8, from 217 to 249: score 41.6, E = 1.8e-08 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G T+L +Aa+ g+++vv+ Ll++GAd+n+ d mKIAA1223 217 QGATALCIAAQEGHVDVVQVLLEHGADPNHADQ 249 Ank: domain 8 of 8, from 250 to 282: score 15.6, E = 1.1 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+T+ +Aa++g+ +++klL ++GA+ mKIAA1223 250 FGRTAMRVAAKNGHSQIIKLLEKYGASSLNGCS 282 //