hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg06326/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1222  ( 395 res)   mbg06326

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SAM_2    SAM domain (Sterile alpha motif)                74.5    2.2e-18   1
SAM_1    SAM domain (Sterile alpha motif)                58.7    1.2e-13   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SAM_1      1/1     287   350 ..     1    66 []    58.7  1.2e-13
SAM_2      1/1     286   352 ..     1    72 []    74.5  2.2e-18

Alignments of top-scoring domains:
SAM_1: domain 1 of 1, from 287 to 350: score 58.7, E = 1.2e-13
                   *->dgwsvesVgeWLesigllgqYidnFlaagyidgdtllqlteeDLedl
                      ++wsv++V+ WL s+ l  qY+ +F +a+ i+g++llql+ + L++l
   mKIAA1222   287    HEWSVQQVSHWLMSLSL-DQYVPEF-SAQSISGEQLLQLDGNKLKAL 331  

                   GvtllGHrkkIlssIqgLk<-*
                   G+t+  +r    + ++ +k   
   mKIAA1222   332 GMTSSQDRALVKKKLKEMK    350  

SAM_2: domain 1 of 1, from 286 to 352: score 74.5, E = 2.2e-18
                   *->veswslesvaeWLesiglegqYkdnFsdqgitglellllrlteedLa
                      v+ ws+++v++WL s+ l  qY++ Fs+q i+g e+l l+l+ ++L 
   mKIAA1222   286    VHEWSVQQVSHWLMSLSL-DQYVPEFSAQSISG-EQL-LQLDGNKL- 328  

                   klalGitsvghRkkilskiqelkqq<-*
                   k alG+ts ++R  + +k++e+k +   
   mKIAA1222   329 K-ALGMTSSQDRALVKKKLKEMKMS    352  

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