hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg07086/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1221  ( 1249 res)   mbg07086

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ZnF_C2H2 zinc finger                                    102.8    4.1e-26   8

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ZnF_C2H2   1/8     337   359 ..     1    23 []    19.7     0.42
ZnF_C2H2   2/8     375   397 ..     1    23 []    31.2  0.00014
ZnF_C2H2   3/8     423   445 ..     1    23 []    16.2      4.5
ZnF_C2H2   4/8     452   475 ..     1    23 []    13.5      9.5
ZnF_C2H2   5/8     513   536 ..     1    23 []    15.4      5.8
ZnF_C2H2   6/8     885   907 ..     1    23 []    17.2      2.3
ZnF_C2H2   7/8     960   982 ..     1    23 []    20.1     0.31
ZnF_C2H2   8/8    1183  1209 ..     1    23 []     5.2       81

Alignments of top-scoring domains:
ZnF_C2H2: domain 1 of 8, from 337 to 359: score 19.7, E = 0.42
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C++ C+  f+ k++L rHm+ H   
   mKIAA1221   337    YPCTK-CNVNFREKkHLHRHMMYH    359  

ZnF_C2H2: domain 2 of 8, from 375 to 397: score 31.2, E = 0.00014
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y C + Cg++f+++++L +Hm +H   
   mKIAA1221   375    YACRE-CGRTFRDRnSLLKHMIIH    397  

ZnF_C2H2: domain 3 of 8, from 423 to 445: score 16.2, E = 4.5
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++Cp+ C + ++ ++ +++H ++H   
   mKIAA1221   423    LQCPQ-CVFGTNCPkTFVQHAKTH    445  

ZnF_C2H2: domain 4 of 8, from 452 to 475: score 13.5, E = 9.5
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      y C++ C++   ++++L+ H    H   
   mKIAA1221   452    YCCEE-CNFMAVTEnELECHRGiAH    475  

ZnF_C2H2: domain 5 of 8, from 513 to 536: score 15.4, E = 5.8
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      y C++ C++++s ++ Lk+H    H   
   mKIAA1221   513    YLCKM-CPFTTSARsILKKHTEyLH    536  

ZnF_C2H2: domain 6 of 8, from 885 to 907: score 17.2, E = 2.3
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                        Cp+ C+ +f +   L +H+r H   
   mKIAA1221   885    KSCPY-CPATFETGvGLSNHVRGH    907  

ZnF_C2H2: domain 7 of 8, from 960 to 982: score 20.1, E = 0.31
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C++ Cg  f +k  L +H+r H   
   mKIAA1221   960    HTCQL-CGGWFDTKiGLSNHVRGH    982  

ZnF_C2H2: domain 8 of 8, from 1183 to 1209: score 5.2, E = 81
                   *->ykCpigCgksfssk.aLkr....HmrvH<-*
                      ++C + Cg +f+ + + +++  +H+++H   
   mKIAA1221  1183    LRCRF-CGLVFRGPlSVQEdwikHLQRH    1209 

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