hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg07086/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1221  ( 1249 res)   mbg07086

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-C2H2  Zinc finger, C2H2 type                          83.5    4.3e-21   8

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-C2H2    1/8     337   359 ..     1    24 []    22.7   0.0086
zf-C2H2    2/8     375   397 ..     1    24 []    32.2  1.2e-05
zf-C2H2    3/8     423   445 ..     1    24 []     6.6       23
zf-C2H2    4/8     452   475 ..     1    24 []    10.3       10
zf-C2H2    5/8     513   536 ..     1    24 []     9.3       12
zf-C2H2    6/8     885   907 ..     1    24 []    16.4     0.67
zf-C2H2    7/8     960   982 ..     1    24 []    13.3      5.2
zf-C2H2    8/8    1183  1209 ..     1    24 []     7.9       17

Alignments of top-scoring domains:
zf-C2H2: domain 1 of 8, from 337 to 359: score 22.7, E = 0.0086
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y C+ +C+  F+ k++L+rH++ H   
   mKIAA1221   337    YPCT-KCNVNFREKKHLHRHMMYH    359  

zf-C2H2: domain 2 of 8, from 375 to 397: score 32.2, E = 1.2e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      y C  +Cg++F+++ +L +H+ +H   
   mKIAA1221   375    YACR-ECGRTFRDRNSLLKHMIIH    397  

zf-C2H2: domain 3 of 8, from 423 to 445: score 6.6, E = 23
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                       +Cp +C    + ++++ +H +tH   
   mKIAA1221   423    LQCP-QCVFGTNCPKTFVQHAKTH    445  

zf-C2H2: domain 4 of 8, from 452 to 475: score 10.3, E = 10
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      y C+ +C+ +  +  +L+ H+ + H   
   mKIAA1221   452    YCCE-ECNFMAVTENELECHRGIaH    475  

zf-C2H2: domain 5 of 8, from 513 to 536: score 9.3, E = 12
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      y C+  C  + s +s Lk+H    H   
   mKIAA1221   513    YLCK-MCPFTTSARSILKKHTEYlH    536  

zf-C2H2: domain 6 of 8, from 885 to 907: score 16.4, E = 0.67
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                       +Cp +C  +F +   L +H r H   
   mKIAA1221   885    KSCP-YCPATFETGVGLSNHVRGH    907  

zf-C2H2: domain 7 of 8, from 960 to 982: score 13.3, E = 5.2
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ++C+  Cg  F +k  L +H r H   
   mKIAA1221   960    HTCQ-LCGGWFDTKIGLSNHVRGH    982  

zf-C2H2: domain 8 of 8, from 1183 to 1209: score 7.9, E = 17
                   *->ykCpfdCgksFsrk....snLkrHlrtH<-*
                       +C   Cg +F+ + + +++  +Hl++H   
   mKIAA1221  1183    LRCR-FCGLVFRGPlsvqEDWIKHLQRH    1209 

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