hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm07245/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1215  ( 575 res)   mpm07245

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
Strabismus Strabismus protein                          1267.1          0   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
Strabismus   1/1      77   575 .]     1   559 []  1267.1        0

Alignments of top-scoring domains:
Strabismus: domain 1 of 1, from 77 to 575: score 1267.1, E = 0
                   *->HrerlReRHrsksresskrgdksvtiqappGePlldneStraedGQe
                      Hr+r R+RHrsksr +++rgdksvtiqap GePlldneStr+++   
   mKIAA1215    77    HRDR-RDRHRSKSR-DGSRGDKSVTIQAP-GEPLLDNESTRGDE--- 117  

                   vievkIlpqDenWGEnTTvvTGmTSEhsiseEditriytkeiedsigldC
                           +D+nWGE+TTvvTG TSEhsis++d+tri  k++eds++ldC
   mKIAA1215   118 --------RDDNWGETTTVVTG-TSEHSISHDDLTRI-AKDMEDSVPLDC 157  

                   rRfvgllvsslLgllsflsPiamCsLPillPqigffPsafdhPeitqtvr
                   +R++g+ ++ +L+llsfl+P+a+    +llP++++              r
   mKIAA1215   158 SRHLGVAAGAILALLSFLTPLAF----LLLPPLLW--------------R 189  

                   dqLeqCgtdCeGLlvslAfKLLlLlIgiWaLFfRkarAdmPRvFvfRALL
                   ++Le+Cgt+CeGL++s+AfKLL+Ll+g+WaLFfR+++A +PRvFv RALL
   mKIAA1215   190 EELEPCGTACEGLFISVAFKLLILLLGSWALFFRRPKASLPRVFVLRALL 239  

                   lvLVflivfaYWLFYiVRileeRdivvetGGdarnYkgIVgYAvSLVDAL
                   +vLVfl+v++YWLFY+VRil+ R+         r Y+g+V++AvSLVDAL
   mKIAA1215   240 MVLVFLLVISYWLFYGVRILDARE---------RSYQGVVQFAVSLVDAL 280  

                   LFiHYLAVVLLELRhLqPqFiikiVRspDGesRfYniGhLSIQrAAvwvL
                   LF+HYLAVVLLELR+LqPqF++k+VRs+DG+sRfYn+GhLSIQr+Avw+L
   mKIAA1215   281 LFVHYLAVVLLELRQLQPQFTLKVVRSTDGASRFYNVGHLSIQRVAVWIL 330  

                   ehYytdFpifNpaLlnapksilakqsgkiGGmaGFKvYnveefggsenns
                   e Yy+dFp++NpaLln+pks+lak+       +GFKvY+++e ++s+nns
   mKIAA1215   331 EKYYHDFPVYNPALLNLPKSVLAKK------VSGFKVYSLGE-ENSTNNS 373  

                   tgqSRAviaAAARRRdsSHnEvyYEEaEfERRVKKRKaRLivAvEEAFtH
                   tgqSRAviaAAARRRd+SHnE+yYEEaE+ERRV+KR+aRL+vAvEEAFtH
   mKIAA1215   374 TGQSRAVIAAAARRRDNSHNEYYYEEAEHERRVRKRRARLVVAVEEAFTH 423  

                   IkrlqdeeatnqkkaprevmDPreAAqAvFpsmaRALqKYLRtTRqQprH
                   Ikrlq+ee    +k+prevmDPreAAqA+F+smaRA+qKYLRtT+qQp+H
   mKIAA1215   424 IKRLQEEE----QKNPREVMDPREAAQAIFASMARAMQKYLRTTKQQPYH 469  

                   tmEsIlkHLefClthdlsPrAFLeRYLsdgptmQyqkervlesqWsLisd
                   tmEsIl+HLefC+thd++P+AFLeRYL +gpt+Qy+ker+l++qW+L+s+
   mKIAA1215   470 TMESILQHLEFCITHDMTPKAFLERYLAAGPTIQYHKERWLAKQWTLVSE 519  

                   EaVssglrdGvvfvLkrlDPDiDCGvsLVVtvkkiPFfnLsEefvdPKsh
                   E+V++gl+dG+vf Lkr+D      +sLVV++kk+PFf+LsEefvdPKsh
   mKIAA1215   520 EPVTNGLKDGIVFLLKRQD------FSLVVSTKKVPFFKLSEEFVDPKSH 563  

                   KFvLkLqsETSV<-*
                   KFv++LqsETSV   
   mKIAA1215   564 KFVMRLQSETSV    575  

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