hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg16803/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1214  ( 397 res)   mbg16803

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PA       PA domain                                       64.4    2.4e-15   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PA         1/1     191   293 ..     1   111 []    64.4  2.4e-15

Alignments of top-scoring domains:
PA: domain 1 of 1, from 191 to 293: score 64.4, E = 2.4e-15
                   *->sp.ggktgpLVyagdgsnsdfsaCesrpgsldpkdvkGKIVLcdrGg
                      sp++ ++g++V a +++++   aC++ +++  p + k +I+L+  G+
   mKIAA1214   191    SPkQDARGEVVMASSAQDRL--ACDPNTKFVAPAHGKHWIALIPKGN 235  

                   csfaeKaanAqaAGAaGvIiynnpddglevmapetdsndkkdpdshgiPa
                   c++++K++nA   +A++v+i+n  ++ +e+++       + ++ + +i a
   mKIAA1214   236 CTYRDKIRNAFLQNASAVVIFNVGSNTNETIT-------MPHAGVEDIVA 278  

                   vfvskedGeallsyi<-*
                   +++++  G+++ s +   
   mKIAA1214   279 IMIPEPKGKEIVSLL    293  

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