hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg08960/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1209  ( 1220 res)   mbg08960

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PH       PH domain                                       34.2    3.1e-06   1
RhoGEF   RhoGEF domain                                   -3.5    0.00014   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RhoGEF     1/1       1   121 [.     1   207 []    -3.5  0.00014
PH         1/1     153   245 ..     1    92 []    34.2  3.1e-06

Alignments of top-scoring domains:
RhoGEF: domain 1 of 1, from 1 to 121: score -3.5, E = 0.00014
                   *->vlkElleTEkkYvrdLeildnvymkpLreaaisskpvltpddietiF
                                                                     
   mKIAA1209     -    ----------------------------------------------- -    

                   sNiediyefhreFLkssLearisssqfedlDekkiepsaqrlGdlFlklk
                              e+L+  Le++  +              +  ++ +F  +k
   mKIAA1209     1 -----------ELLQ-DLENCEND--------------PVAIAECFV-SK 23   

                   epflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassntgAkd
                   ++++ +Y+ Yc+n+p+++ +l+     +  ++F+++ +e   +       
   mKIAA1209    24 SEEFHIYTQYCTNYPRSVAVLTECMRNKILTKFFRERQETLRH------- 66   

                   davkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedqpdredLkkaldl
                       l L s+LlkPvqRil+Y+LLL+e+  h +     +++    +a+d 
   mKIAA1209    67 ---SLPLGSYLLKPVQRILKYHLLLHEIENHLDK--ATEGYDVVLDAIDT 111  

                   lqdlaksiNe<-*
                   +q++a +iN+   
   mKIAA1209   112 MQRVAWHIND    121  

PH: domain 1 of 1, from 153 to 245: score 34.2, E = 3.1e-06
                   *->vikeGwLlkkggkkswkkRyfvLfndvLlyykdkk..kkpkgsipLs
                      ++ eG ++ +      k+R ++L +  Ll+ k++++++++k  i   
   mKIAA1209   153    LVLEGTFRIQK---AKKERTLFLLDQLLLITKKRDdtFTYKAHILCG 196  

                   giqvekvpdnkrkncFeirt.dr..etlllqaeseeerkeWvkaiqsair
                   ++ +++v +  ++ +F + +  +++ ++++qa+s+++++ Wv +++++i 
   mKIAA1209   197 NLMLVEVIPK-EPLSFSVFHyKNpkLQHTVQAKSQQDKRLWVLHLKRLIL 245  

                   <-*
                      
   mKIAA1209     -     -    

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