hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg11133/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1208  ( 1237 res)   mbg11133

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
NL       Domain found in Notch and Lin-12                42.3    6.6e-08   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
NL         1/2     433   471 ..     1    42 []    38.5  9.3e-07
NL         2/2     500   538 ..     1    42 []    11.8    0.041

Alignments of top-scoring domains:
NL: domain 1 of 2, from 433 to 471: score 38.5, E = 9.3e-07
                   *->pqdpwsrCeplydaqCw.dkfgDGvCDeeCNnaeClwDGgDCs<-*
                       + p ++C    +++C ++ ++DG+CD++CNn +C+wDGgDCs   
   mKIAA1208   433    LTWPVPNC----AEGCPgSWIKDGYCDKACNNSACDWDGGDCS    471  

NL: domain 2 of 2, from 500 to 538: score 11.8, E = 0.041
                   *->pqdpwsrCeplydaqCw.dkfgDGvCDeeCNnaeClwDGgDCs<-*
                        +  s C    +++C+++  +D++CD++CN   C++D gDC    
   mKIAA1208   500    GINTISYC----NQGCAnSWLADKFCDQACNVLSCGFDAGDCG    538  

//