hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg11133/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1208  ( 1237 res)   mbg11133

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
DMAP_binding DMAP1-binding Domain                       148.9    8.8e-41   1
Notch        Notch (DSL) domain                          33.7    4.1e-06   2
efhand       EF hand                                     18.8       0.13   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
Notch          1/2     435   471 ..     1    42 []    28.3    8e-05
Notch          2/2     502   538 ..     1    42 []    13.4   0.0056
DMAP_binding   1/1     701   813 ..     1   116 []   148.9  8.8e-41
efhand         1/1     990  1018 ..     1    29 []    18.8     0.13

Alignments of top-scoring domains:
Notch: domain 1 of 2, from 435 to 471: score 28.3, E = 8e-05
                   *->sevsrdlCeakykrkC.aerfaNGvCNqeCNnaaCgfDGgDCs<-*
                       +v +  C     ++C+ +  ++G C+ +CNn aC +DGgDCs   
   mKIAA1208   435    WPVPN--CA----EGCpGSWIKDGYCDKACNNSACDWDGGDCS    471  

Notch: domain 2 of 2, from 502 to 538: score 13.4, E = 0.0056
                   *->sevsrdlCeakykrkCaer.faNGvCNqeCNnaaCgfDGgDCs<-*
                      +  s   C+    ++Ca+   a++ C+q+CN   CgfD gDC    
   mKIAA1208   502    NTISY--CN----QGCANSwLADKFCDQACNVLSCGFDAGDCG    538  

DMAP_binding: domain 1 of 1, from 701 to 813: score 148.9, E = 8.8e-41
                   *->eaasLPaeVreRLaeLdldLsegdiTeKGyeKkKlkLLaeFLpadqr
                      ++++LP+e++ RL++Ldl+L++gdiT KGy+++K++LL++FL ++ +
   mKIAA1208   701    NISLLPKEAQVRLSNLDLQLERGDITLKGYNLSKSALLRSFLGNSLD 747  

                   tkiklqaprtdetkknlevpqnqlsnlesklkseelseevylekVkalLa
                   tkik+qa rtdetk+nlevpq+++s+++  +++++++++ ++++ +a ++
   mKIAA1208   748 TKIKPQA-RTDETKGNLEVPQENPSHRR--PHGFAGEHRSERWTAPAETV 794  

                   kelerengkpmpskersgl<-*
                   ++++r+++ ++p+++++++   
   mKIAA1208   795 TVKGRDHALNPPPVLETNA    813  

efhand: domain 1 of 1, from 990 to 1018: score 18.8, E = 0.13
                   *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-*
                       + ++F e+D+D++G +s  E +++ +++   
   mKIAA1208   990    NISQVFHEVDTDQSGVLSDREIRTLATRI    1018 

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