hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mib/mib01074/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1207 ( 2078 res) mib01074 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- C2 Protein kinase C conserved region 2 (CalB) 294.3 9.2e-84 7 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- C2 1/7 12 111 .. 1 92 [] 67.8 1.4e-15 C2 2/7 211 310 .. 1 92 [] 52.1 7.2e-11 C2 3/7 370 484 .. 1 92 [] 59.2 5.2e-13 C2 4/7 1138 1245 .. 1 92 [] 55.1 9.2e-12 C2 5/7 1300 1407 .. 1 92 [] 5.1 21 C2 6/7 1552 1651 .. 1 92 [] 52.7 4.9e-11 C2 7/7 1787 1916 .. 1 92 [] 19.4 0.52 Alignments of top-scoring domains: C2: domain 1 of 7, from 12 to 111: score 67.8, E = 1.4e-15 *->tLtvkiisArnLp.......DPYVkvs......kTkvvkktlsgfNP L+v + sA n+p+++ +++DP V v ++ ++kTk v + l NP mKIAA1207 12 MLRVIVESATNIPktkfgkpDPIVSVIfkdekkKTKKVDNEL---NP 55 vWnEesetFeFevpp......s.LeieVyDk......dfiGrvtippnna vWnE +eF++ + +++s+L+i V+D+++ + +++iG++t++ mKIAA1207 56 VWNE---ILEFDLRGipldssSsLVIVVKDFetigqnKLIGTATVS---- 98 hqhsadglihlsell.ggrh.kl<-* l++l++ + ++ mKIAA1207 99 ----------LKDLIgDQNRsLP 111 C2: domain 2 of 7, from 211 to 310: score 52.1, E = 7.2e-11 *->tLtvkiisArnLp....DPYVkvs......kTkvvkktlsgfNPvWn +++v++i++r+L +++ P Vkv+ +++++T++++++ NP+++ mKIAA1207 211 QIRVRVIEGRQLCgnniRPVVKVHicgqthRTRIKRGN----NPFFD 253 EesetFeFevpp.......s.LeieVyDk......dfiGrvtippnnahq E F+++v+ ++++ + + i+Vy++++ + + ++G++ i+ mKIAA1207 254 E---LFFYNVHItpselmdEiISIRVYNShslradCLMGEFKID------ 294 hsadglihlsell.ggrh.kl<-* ++++ + +++ ++k+ mKIAA1207 295 -----VGFVYDEPgHAVMrKW 310 C2: domain 3 of 7, from 370 to 484: score 59.2, E = 5.2e-13 *->tLtvkiisArnLp........................DPYVkvs... t+++ki++A+++p ++ + + + +++ ++++ DP+V+vs + mKIAA1207 370 TFMLKIYRAEDIPqmddafsqtvkeifggnadkknlvDPFVEVSfag 416 ...kTkvvkktlsgfNPvWnEesetFeFevpp....s.LeieVyDk.... ++ +T++++++ NP+Wn+ + + + ++ +++++VyD+++ + mKIAA1207 417 kkvCTNIIERNA---NPEWNQ---VVNLQIKFpsmcEkIKLTVYDWdrlt 460 ..dfiGrvtippnnahqhsadglihlsell.ggrh.kl<-* ++d++G++++ ls++ +g+ + mKIAA1207 461 knDVVGTTYLY--------------LSKIAaSGGEvEA 484 C2: domain 4 of 7, from 1138 to 1245: score 55.1, E = 9.2e-12 *->tLtvkiisArnLp........DPYVkvs......kTkvvkktlsgfN L+++i++ArnL+ ++++ +DPY+ vs ++++ T+++ tl N mKIAA1207 1138 HLRCYIYQARNLMaldkdsfsDPYAHVSflhrskTTEIIHSTL---N 1181 PvWnEesetFeFevpp............s.LeieVyDk......dfiGrv P+W++ t+ F+ ++ +++++ +++ +++ie++D + ++++f+Gr mKIAA1207 1182 PTWDQ---TIIFDEVEifgepqtvlqnpPnVTIELFDNdqvgkdEFLGRS 1228 tippnnahqhsadglihlsell.ggrh.kl<-* +++p l +l ++ ++ mKIAA1207 1229 ICSP-------------LVKLNsETDItPK 1245 C2: domain 5 of 7, from 1300 to 1407: score 5.1, E = 21 *->tLtvkiisArnLp...........DPYVkvs......kTkvvkktls +Lt i A +L++ ++ + + P +v+ ++ + + v+k + mKIAA1207 1300 QLTAIEILAWGLRnmknyqmasvtSPSLVVEcggervESVVIKSLKK 1346 gfNPvWnEesetFeFevpp........s.LeieVyDk......dfiGrvt P + ++ F + ++++ +L+i+V D++ +++ ++G++t mKIAA1207 1347 --TPNFPS---SVLFMKVFlpkeelymPpLVIKVIDHrqfgrkPVVGQCT 1391 ippnnahqhsadglihlsell.ggrh.kl<-* i+ hl++ + + +k+ mKIAA1207 1392 ID-------------HLDRFRcDPYAgKE 1407 C2: domain 6 of 7, from 1552 to 1651: score 52.7, E = 4.9e-11 *->tLtvkiisArnLp........DPYVkvs........kTkvvkktlsg t++++i+++ +L + ++++ DPY+k++ +++ ++ + +++tl mKIAA1207 1552 TVRIYIVQGLQLQpqdnnglcDPYIKITlgkkviedRDHYIPNTL-- 1596 fNPvWnEesetFeFevpp...s.LeieVyDk......dfiGrvtippnna NPv++ ++e+++ +++++L+i+VyD+++ ++++ +G++ti+ mKIAA1207 1597 -NPVFGR---MYELSCYLpqeKdLKISVYDYdtftrdEKVGETTID---- 1638 hqhsadglihlsell.ggrh.kl<-* l+ + +++ mKIAA1207 1639 ----------LENRFlSRFGsHC 1651 C2: domain 7 of 7, from 1787 to 1916: score 19.4, E = 0.52 *->tLtvkiisArnLp............DPYVkvs.........kTkvvk L+v i ++ + + ++ ++ + +D YVk + +++ +++kT v+ mKIAA1207 1787 YLRVIIWNTKDVIldeksitgedmsDIYVKGWisgseenkqKTDVHY 1833 ktls.gfNPvWnEesetFeFevpp........................s. ++l++ N W F F+ p ++ ++++ + ++++ + + + mKIAA1207 1834 RSLDgEGNFNWRF---VFPFDYLPaeqlcivakkehfwsidqtefrvpPr 1880 LeieVyDk......dfiGrvtippnnahqhsadglihlsell.ggrh.kl L+i+++D ++ + +d +G ++++ l + + ++++ mKIAA1207 1881 LIIQIWDNdkfsldDYLGFLELD--------------LHRTIiPAKTsEK 1916 <-* mKIAA1207 - - //