hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mib/mib01074/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1207 ( 2078 res) mib01074 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- C2 C2 domain 380.2 2.1e-110 7 FerB FerB (NUC096) domain 200.5 2.6e-56 1 FerI FerI (NUC094) domain 199.5 5.3e-56 1 FerA FerA (NUC095) domain 131.0 2.1e-35 1 Pex24p Integral peroxisomal membrane peroxin -145.8 0.34 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- C2 1/7 13 96 .. 1 88 [] 84.5 2.1e-21 C2 2/7 212 292 .. 1 88 [] 55.2 1.5e-12 FerI 1/1 293 364 .. 1 72 [] 199.5 5.3e-56 C2 3/7 371 469 .. 1 88 [] 83.3 5e-21 FerA 1/1 674 739 .. 1 67 [] 131.0 2.1e-35 FerB 1/1 766 841 .. 1 79 [] 200.5 2.6e-56 Pex24p 1/1 722 1023 .. 1 563 [] -145.8 0.34 C2 4/7 1139 1229 .. 1 88 [] 77.1 3.5e-19 C2 5/7 1301 1391 .. 1 88 [] 16.3 0.052 C2 6/7 1553 1636 .. 1 88 [] 79.1 9.1e-20 C2 7/7 1788 1901 .. 1 88 [] 2.1 0.85 Alignments of top-scoring domains: C2: domain 1 of 7, from 13 to 96: score 84.5, E = 2.1e-21 *->LrVtvieAknLppkDfkngksDPYVkvslggdkkdqkkkTkvikktl LrV v +A n p+ +gk+DP V v + + kkkTk +++ l mKIAA1207 13 LRVIVESATNIPKTK--FGKPDPIVSVIFKD----EKKKTKKVDNEL 53 NPvWNEtFtFevpppdlqe..tLeieVyDydrfgrddflGevs<-* NPvWNE ++F++ +l+++++L+i V+D+ ++g ++++G+++ mKIAA1207 54 NPVWNEILEFDLRGIPLDSssSLVIVVKDFETIGQNKLIGTAT 96 C2: domain 2 of 7, from 212 to 292: score 55.2, E = 1.5e-12 *->LrVtvieAknLppkDfkngksDPYVkvslggdkkdqkkkTkvikktl +rV+vie++ L n + P Vkv++ g q+++T++++++ mKIAA1207 212 IRVRVIEGRQLCG----N-NIRPVVKVHICG----QTHRTRIKRGN- 248 NPvWNEtFtFe..vpppdlqe.tLeieVyDydrfgrddflGevs<-* NP ++E F ++ +++p +l ++++ i Vy++ +++ d ++Ge++ mKIAA1207 249 NPFFDELFFYNvhITPSELMDeIISIRVYNSHSLRADCLMGEFK 292 FerI: domain 1 of 1, from 293 to 364: score 199.5, E = 5.3e-56 *->lDvGtVYdePeHafmrKWlLLsDPdDfsaGaKGYLKvsmfVvGkGDe +DvG+VYdeP+Ha+mrKWlLL+DP+D+s+GaKGY+KvsmfV+G+GDe mKIAA1207 293 IDVGFVYDEPGHAVMRKWLLLNDPEDTSSGAKGYMKVSMFVLGTGDE 339 ppvekKdseeDkDDIEsNLLLPaGV<-* pp+ek+d+++D+DD+EsNLLLPaG+ mKIAA1207 340 PPPEKRDRDNDSDDVESNLLLPAGI 364 C2: domain 3 of 7, from 371 to 469: score 83.3, E = 5e-21 *->LrVtvieAknLppkDf...............kngksDPYVkvslggd +++++A++ p +D+ +++ ++ +++ +k+ + DP+V+vs+ g mKIAA1207 371 FMLKIYRAEDIPQMDDafsqtvkeifggnadKKNLVDPFVEVSFAG- 416 kkdqkkkTkvikktlNPvWNEtFtFevpppdlqetLeieVyDydrfgrdd +k T +i+++ NP+WN++ +++ +p++ e+++++VyD+dr++++d mKIAA1207 417 ---KKVCTNIIERNANPEWNQVVNLQIKFPSMCEKIKLTVYDWDRLTKND 463 flGevs<-* ++G++ mKIAA1207 464 VVGTTY 469 FerA: domain 1 of 1, from 674 to 739: score 131.0, E = 2.1e-35 *->lalkakdsaasvgelwLkLideliediaSktLpdiegkpsvTaLDrq +++++k++a++++e+wLkLide+ied +++tLp++egk++vT+LD+q mKIAA1207 674 SGIQGKIPANQLAEVWLKLIDEVIED-TRYTLPVTEGKANVTVLDTQ 719 IlkLRkrkLsqIrEaAlrlk<-* I+kLR+r+LsqI+EaAlr++ mKIAA1207 720 IRKLRSRFLSQIHEAALRMR 739 FerB: domain 1 of 1, from 766 to 841: score 200.5, E = 2.6e-56 *->PQnSlPDifIWMlsgeKRvAYaRiPAhdvLyStvgeeetGkdCGKvQ PQnS+PDi+IWM++geKR+AYaRiPAh+vLySt+g++++Gk+CGK+Q mKIAA1207 766 PQNSMPDIIIWMIRGEKRLAYARIPAHQVLYSTSGGNASGKYCGKTQ 812 TvfLklPgekgnGpAGWkVpaklrlyLWLGLs<-* T++Lk+P+ek+nGp kVp++lr+++WLGLs mKIAA1207 813 TILLKYPQEKTNGP---KVPVELRVNIWLGLS 841 Pex24p: domain 1 of 1, from 722 to 1023: score -145.8, E = 0.34 *->pklSplltsTPpniskllkkaypyllifDe...iLkvltWtsDNpwl +S ++s i ++ ++ + + D+++++L + W+ ++ mKIAA1207 722 KLRS-RFLS---QIHEAALRMRSE--ATDVkstLLEIEEWL--DK-- 758 tvlilflFTWliilYpeilvETEASvylPFTKiLllvyg....Iwvpayl ++ l T e + + P + ++ +++++ ++a + mKIAA1207 759 ---LMQL-T-------EEPQ-----NSMP---DIIIWMIrgekRLAYARI 789 rkhvLepeyYpsklkakeelstsakyeekteksyetredsksftlkaelr h +++s + +k + + mKIAA1207 790 PAHQ---------------VLYSTS---------GGNASGKYCGKTQTIL 815 ADAQNLmSGFQmLQRRWSQPKTTTLKTEVKeqtaassPsLdrENEPAGVK LK q+ + +P + mKIAA1207 816 ------------------------LKY---PQEKTNGPKVPV-------- 830 SNEATKPSVTEEKEkeaekakekksleIvhlltdvqnktevSSESlrNEl ++++ I + l v +k + mKIAA1207 831 ----------------------ELRVNIWLGLSAVEKKFNS--------- 849 VnkKLKNEQlvkvldllesfLspiasfsevnedisGKrLfFttlflspiy E + ++ f+e+ e + +L F + mKIAA1207 850 -----FAEGT-------------FTVFAEMYEN-Q--ALVF--------G 870 mfiYmDKlifflppGTYralliilGwgfLiYhspslratRRlLWkfriVr + ++ +++ ++ ++G + r+ mKIAA1207 871 KWG----TSGLVGR---HKFSDVTG------KIKLKRE------------ 895 flvllitgldiSSFLPgklKenqiifalqqkqvkelildEppepkledkK + l +g + ++ +++ + l+E+ ++ + mKIAA1207 896 -FFLPPKGWEW-----EGDWV-----VDPERSL----LTEADAGHT---- 926 PvrFtreKKeddaiHlLklllseqYVVkdNftNedLkikESSDPTEKCve Ft e mKIAA1207 927 --EFT-------------------------------------------DE 931 lfEnQRrwlgikgWksklLsyerydwtdefrnaqkrppefslppleglgE ++ n r +g +Wk e++ +td+ + +p+e ++pp g mKIAA1207 932 VYQNENRYPGG-EWKQA----EDT-YTDANGDKAASPSEMTCPP----G- 970 EELPmpwgWiFekdddWrlDltnDgwvverglkavtttdPspdEGWIYyD w+W+ dd W D +++v e g + +t D mKIAA1207 971 ------WEWE---DDAWIYDI--NRAVDEKGWEYGITIP---------PD 1000 ntWkypsktdsfrkytRRRrWiR<-* n+ k ++ RRRr++R mKIAA1207 1001 NKPKSWVAAEKMYHTHRRRRLVR 1023 C2: domain 4 of 7, from 1139 to 1229: score 77.1, E = 3.5e-19 *->LrVtvieAknLppkDfkngksDPYVkvslggdkkdqkkkTkvikktl Lr+++++A+nL++ D k + sDPY+ vs++ k T++i++tl mKIAA1207 1139 LRCYIYQARNLMALD-KDSFSDPYAHVSFLH----RSKTTEIIHSTL 1180 NPvWNEtFtFe.v.....pppdlqe..tLeieVyDydrfgrddflGevs< NP+W++t F++v+ ++p lq++++++ie++D+d +g+d+flG+ + mKIAA1207 1181 NPTWDQTIIFDeVeifgePQTVLQNppNVTIELFDNDQVGKDEFLGRSI 1229 -* mKIAA1207 - - C2: domain 5 of 7, from 1301 to 1391: score 16.3, E = 0.052 *->LrVtvieAknLppkDf..kngksDPYVkvslggdkkdqkkkTkvikk L+ i A +L+++ + ++ + ++P +v++gg + + vik+ mKIAA1207 1301 LTAIEILAWGLRNMKNyqMASVTSPSLVVECGG----ERVESVVIKS 1343 t.lNPvWN....EtFtFevpppdlqe.tLeieVyDydrfgrddflGevs< + P + ++ + +F p ++l +++L+i+V D++ fgr ++G+++ mKIAA1207 1344 LkKTPNFPssvlFMKVFL-PKEELYMpPLVIKVIDHRQFGRKPVVGQCT 1391 -* mKIAA1207 - - C2: domain 6 of 7, from 1553 to 1636: score 79.1, E = 9.1e-20 *->LrVtvieAknLppkDfkngksDPYVkvslggdkkdqkkkTkvikktl +r++++++ L p D ng++DPY k++lg+ k+ + + i++tl mKIAA1207 1553 VRIYIVQGLQLQPQD-NNGLCDPYIKITLGK-KV-IEDRDHYIPNTL 1596 NPvWNEtFtFevpppdlqetLeieVyDydrfgrddflGevs<-* NPv+ +++++ +p+ ++ L+i+VyDyd+f+rd+ +Ge++ mKIAA1207 1597 NPVFGRMYELSCYLPQEKD-LKISVYDYDTFTRDEKVGETT 1636 C2: domain 7 of 7, from 1788 to 1901: score 2.1, E = 0.85 *->LrVtvieAknLppkDf..kng..ksDPYVkvslggdkkdqkkkTkvi LrV + k+ + D+++++g+++sD YVk ++ g + +k+kT v+ mKIAA1207 1788 LRVIIWNTKDVIL-DEksITGedMSDIYVKGWISGSEE-NKQKTDVH 1832 kktl....NPvWNEtFtFe.vpppdlqe..t.................Le ++l++++N W +F F+ +p ++l ++++ + ++++ + +++L mKIAA1207 1833 YRSLdgegNFNWRFVFPFDyLPAEQLCIvaKkehfwsidqtefrvpprLI 1882 ieVyDydrfgrddflGevs<-* i+++D+d+f+ dd lG + mKIAA1207 1883 IQIWDNDKFSLDDYLGFLE 1901 //