hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg00219/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1206  ( 1374 res)   mbg00219

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
IPT      ig-like, plexins, transcription factors        111.9    7.4e-29   3
PSI      domain found in Plexins, Semaphorins and Int    64.7    1.2e-14   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PSI        1/3     122   174 ..     1    56 []    47.3    2e-09
PSI        2/3     268   330 ..     1    56 []    15.1      1.3
PSI        3/3     435   481 ..     1    56 []    17.9     0.67
IPT        1/3     482   573 ..     1   111 []    64.8  1.1e-14
IPT        2/3     574   648 ..     1   111 []    34.6  1.3e-05
IPT        3/3     650   781 ..     1   111 []    16.8     0.75

Alignments of top-scoring domains:
PSI: domain 1 of 3, from 122 to 174: score 47.3, E = 2e-09
                   *->rCsqygvtsCseCllardpygCgWCssegrCtrgerCderrgsrqnw
                       C q+  ++C+ Cl+ardp  CgWC ++grCtr+++C+++ ++ + +
   mKIAA1206   122    ACPQF--PNCTTCLQARDPL-CGWCILQGRCTRRGECGRAAQPNHWL 165  

                   ssgpssqCp<-*
                    s+  ++Cp   
   mKIAA1206   166 WSYEDNHCP    174  

PSI: domain 2 of 3, from 268 to 330: score 15.1, E = 1.3
                   *->rCsqygv....tsCseCllardpygCgWCssegrCtrgerCderrgs
                      +Cs+  + +    C +C+++ ++  C+WC+  ++C+ ge+C+e++  
   mKIAA1206   268    DCSAVQAlevaAPCRACVSSLWR--CHWCPQSSHCIYGEHCPEGEKA 312  

                   rqnwssg.....pssqCp<-*
                   ++++   +   ++ + Cp   
   mKIAA1206   313 VYSAQEVdilvrGPEACP    330  

PSI: domain 3 of 3, from 435 to 481: score 17.9, E = 0.67
                   *->rCsqygvtsCseCllardpygCgWCss.egrCtrgerCderrgsrqn
                      +C+ ++ ++Cs C +a     C WC +++ +C  g+ C++       
   mKIAA1206   435    DCAMGH-PDCSHCQAANGSLSCLWCGDgQPACRYGPLCPP-----GA 475  

                   wssgpssqCp<-*
                   +++     Cp   
   mKIAA1206   476 VEQ----LCP    481  

IPT: domain 1 of 3, from 482 to 573: score 64.8, E = 1.1e-14
                   *->dPvItrisPssGplsGGteritlcGknLdsdgsvvfvrvgvgGrvWe
                       P+I  i+P +Gp +GG   it+ G+nL+  +++v+  v+v+    +
   mKIAA1206   482    IPSIDVIEPLTGPPEGGL-AITILGSNLGQAFNDVRNAVTVA----G 523  

                   vpCtflpsdvhGkdsstaivCrtPpylnqspgpgsvpvrvtgevgfdngg
                   +pC+++ps +     s  ivC+t p++n   ++g+v v     ++ +  g
   mKIAA1206   524 QPCNPDPSLYR---ISARIVCVTSPAPNG--TAGPVQV----AIKSRPPG 564  

                   vrtelsppspFtYv<-*
                   ++t     ++FtY    
   mKIAA1206   565 IST-----QNFTYQ    573  

IPT: domain 2 of 3, from 574 to 648: score 34.6, E = 1.3e-05
                   *->dPvItrisPssGplsGGteritlcGknLdsdgsvvfvrvgvgGrvWe
                      dPv ++++P +Gp +GGt  +t++G++L++ g  ++v+vg       
   mKIAA1206   574    DPVLLSLNPQWGPQAGGT-QLTIHGQYLQT-GGNISVFVG------D 612  

                   vpCtflpsdvhGkdsstaivCrtPpylnqspgpgsvpvrvtgevgfdngg
                   +pC  +             +C++ p+      + + pv       +   +
   mKIAA1206   613 QPCPMS-------------LCVLKPS-----YATPCPV----FGHV---E 637  

                   vrtelsppspFtYv<-*
                   +  +   + pF+Y+   
   mKIAA1206   638 RKLL---TTPFRYT    648  

IPT: domain 3 of 3, from 650 to 781: score 16.8, E = 0.75
                   *->dPvItrisPssGplsGGteritlcGknLdsdgsvvfvrvgvgGrvWe
                      +P   + +Ps +++ GG+ +i ++G+ Ld+ ++++  +v +     e
   mKIAA1206   650    NPQLVEAEPSVSFRGGGR-VIRVRGTGLDV-VWQPLLSVWL-----E 689  

                   vpCtflpsdvhG.....................................k
                    + ++      G + ++ +++++ + +  +++   + +++  + ++  ++
   mKIAA1206   690 DEPKVKAL---GvqaqdanprrscgapaadpqacihlesgllqcstlcsV 736  

                   dsstaivCrtPpylnqspgpgsvpvrvtgevgfdnggvrtel.sppspFt
                   +ss+ ++C +P+ ++   g+ + +v     + +dn +v++   s  + F 
   mKIAA1206   737 NSSSLLLCHSPAVPD---GALPKRV----FFALDNMQVDFASaSGGQGFL 779  

                   Yv<-*
                   Y    
   mKIAA1206   780 YQ    781  

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