hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg00219/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1206  ( 1374 res)   mbg00219

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TIG      IPT/TIG domain                                 108.7    1.1e-28   3
PSI      Plexin repeat                                   88.0    1.9e-22   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PSI        1/3     122   174 ..     1    63 []    67.2  3.5e-16
PSI        2/3     268   330 ..     1    63 []    13.5    0.034
PSI        3/3     435   481 ..     1    63 []    22.4   0.0034
TIG        1/3     483   573 ..     1   105 []    54.3  2.7e-12
TIG        2/3     575   648 ..     1   105 []    38.9  1.2e-07
TIG        3/3     651   781 ..     1   105 []    18.7      0.1

Alignments of top-scoring domains:
PSI: domain 1 of 3, from 122 to 174: score 67.2, E = 3.5e-16
                   *->nCsqytsCssCLaardpfyCgWCssegrCtrgsaytsfyGeCprae.
                       C q+++C+ CL+ardp  CgWC ++grCtr++       eC ra++
   mKIAA1206   122    ACPQFPNCTTCLQARDP-LCGWCILQGRCTRRG-------ECGRAAq 160  

                   pendqwldwswsssk..Cp<-*
                   p+     +w+ws+++++Cp   
   mKIAA1206   161 PN-----HWLWSYEDnhCP    174  

PSI: domain 2 of 3, from 268 to 330: score 13.5, E = 0.034
                   *->nCsq......ytsCssCLaardpfyCgWCssegrCtrgsaytsfyGe
                      +Cs+ +  +    C +C+++ +  +C+WC++ ++C++g+       +
   mKIAA1206   268    DCSAvqalevAAPCRACVSSLW--RCHWCPQSSHCIYGE-------H 305  

                   Cpraependqwldw..........swssskCp<-*
                   Cp++e        +  + ++ +  +   + Cp   
   mKIAA1206   306 CPEGE-------KAvysaqevdilVRGPEACP    330  

PSI: domain 3 of 3, from 435 to 481: score 22.4, E = 0.0034
                   *->nCsqy.tsCssCLaardpfyCgWCss.egrCtrgsaytsfyGeCpra
                      +C+  +++Cs+C aa+  + C WC++++  C +g+        Cp +
   mKIAA1206   435    DCAMGhPDCSHCQAANGSLSCLWCGDgQPACRYGP-------LCPPG 474  

                   ependqwldwswssskCp<-*
                   +           +++ Cp   
   mKIAA1206   475 A-----------VEQLCP    481  

TIG: domain 1 of 3, from 483 to 573: score 54.3, E = 2.7e-12
                   *->PvItsisPssgplsGGteiTitGsnlgsgsePrirkntfededikVt
                      P+I  i+P++gp +GG  iTi+Gsnlg         + f+d +  Vt
   mKIAA1206   483    PSIDVIEPLTGPPEGGLAITILGSNLG---------QAFNDVRNAVT 520  

                   fggtpvpCdvisssss..tqivCktPpva.ggpsppvvtvsvdgggsgdg
                   ++g+p  C++++s +  +  ivC+t p+++g   p  v+v +++ +    
   mKIAA1206   521 VAGQP--CNPDPSLYRisARIVCVTSPAPnGTAGP--VQVAIKSRP---- 562  

                   rssspvtFtYv<-*
                    + s++ FtY+   
   mKIAA1206   563 PGISTQNFTYQ    573  

TIG: domain 2 of 3, from 575 to 648: score 38.9, E = 1.2e-07
                   *->PvItsisPssgplsGGteiTitGsnlgsgsePrirkntfededikVt
                      Pv  s++P +gp +GGt++Ti+G++l++g             +i+V+
   mKIAA1206   575    PVLLSLNPQWGPQAGGTQLTIHGQYLQTG------------GNISVF 609  

                   fggtpvpCdvissssstqivCktPpva.ggpsppvvtvsvdgggsgdgrs
                   +g++p       + +s  +++  P++a++ p        +++++    r 
   mKIAA1206   610 VGDQP-------CPMS--LCVLKPSYAtPCP-------VFGHVE----RK 639  

                   sspvtFtYv<-*
                     +++F+Y+   
   mKIAA1206   640 LLTTPFRYT    648  

TIG: domain 3 of 3, from 651 to 781: score 18.7, E = 0.1
                   *->PvItsisPssgplsGGteiTitGsnlgsgsePrirkntfededikVt
                      P   + +Ps ++ +GG  i ++G++l+ +++P +           V+
   mKIAA1206   651    PQLVEAEPSVSFRGGGRVIRVRGTGLDVVWQPLLS----------VW 687  

                   fggtpv.......................................pCdvi
                   + ++p+ +  + + ++ +++++ + +  +++   + +++  + ++ C v+
   mKIAA1206   688 LEDEPKvkalgvqaqdanprrscgapaadpqacihlesgllqcstLCSVN 737  

                   ssssstqivCktPpva.ggpsppvvtvsvdggg.sgdgrssspvtFtYv<
                   sss    + C +P+v++g  +   v++ +d+ + +  +  s ++ F Y+ 
   mKIAA1206   738 SSSL---LLCHSPAVPdGALPKR-VFFALDNMQvD-FASASGGQGFLYQ  781  

                   -*
                     
   mKIAA1206     -    -    

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