hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg09862/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1201  ( 753 res)   mbg09862

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
GRAM     GRAM domain                                    109.7    5.5e-29   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
GRAM       1/1     111   178 ..     1    82 []   109.7  5.5e-29

Alignments of top-scoring domains:
GRAM: domain 1 of 1, from 111 to 178: score 109.7, E = 5.5e-29
                   *->ekfrkiFkeilppeEkLiadckaeVysCplqrpfskipvqGrlYltn
                      e+frk Fk +lp++E+Li d     ysC+lqr   +i++qGrlYl++
   mKIAA1201   111    EDFRKLFK-QLPDTERLIVD-----YSCALQR---DILLQGRLYLSE 148  

                   nrlcFrSdklgdltkegvyklviPladiervekes<-*
                   n++cF+S++++++t      l+++l+di+++ ke+   
   mKIAA1201   149 NWICFYSNIFRWET-----LLTVRLKDICSMTKEK    178  

//