hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbg/mbg09531/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1200 ( 1447 res) mbg09531 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- MyTH4 Domain in Myosin and Kinesin Tails 175.0 7.3e-48 1 PH Pleckstrin homology domain. 133.9 1.8e-35 2 B41 Band 4.1 homologues 89.0 5.9e-22 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PH 1/2 664 759 .. 1 82 [] 91.0 1.4e-22 PH 2/2 773 883 .. 1 82 [] 43.0 4e-08 MyTH4 1/1 917 1071 .. 1 166 [] 175.0 7.3e-48 B41 1/1 1078 1315 .. 1 232 [] 89.0 5.9e-22 Alignments of top-scoring domains: PH: domain 1 of 2, from 664 to 759: score 91.0, E = 1.4e-22 *->vikeGwLlkks..k.swkkryfvLfngvLlyyksk.....kpkgsip ++k+G+Llk++++ ++wk+r+fvL+ g++lyyks+++ +kp+g ++ mKIAA1200 664 LEKSGYLLKMGsrVkTWKRRWFVLRQGQILYYKSPsdvirKPQGQVD 710 Lsgc.svre.p...cFeivt.drtlllqAeseeereeWvealqsaiaka< L++ +++++++ +F+++++++t++l Aes++ +eeW++ lqs+++ + mKIAA1200 711 LNSHcQIVReEeaqTFQLISgNKTYYLTAESPSLLEEWIRVLQSLLKVQ 759 -* mKIAA1200 - - PH: domain 2 of 2, from 773 to 883: score 43.0, E = 4e-08 *->vikeGwLlkksk.swkkryfvLfngvLlyyksk...kpkgsipLsgc ++ +GwL+k + ++ k +++ L +++++yy+s+++++p g++p++++ mKIAA1200 773 PTVKGWLTKVKHgHSKLVWCALVGKTFYYYRSHedkRPLGCLPVQDA 819 svre.p......................cFeivt.dr..tlllqAeseee ++e +++ +++++ + ++ ++ +++ ++ i+ +++++t+ll + e mKIAA1200 820 HIEEvDrscdsdedyeaggtgrllsshcTLVIHPpEHspTYLLIGT-KHE 868 reeWvealqsaiaka<-* ++ W+ +l a+ + mKIAA1200 869 KDTWLYHLTVAAGGS 883 MyTH4: domain 1 of 1, from 917 to 1071: score 175.0, E = 7.3e-48 *->fskkPiktsLLkleddkeedskeAvkiFkaILkfMGDlPlpkssssk +s++ + +sL++l+++ ++ eA+k+Fk+++ f++ +P++ mKIAA1200 917 YSQEGLCASLTTLPSE--ALQTEALKLFKSCQLFIN-VPVEA----- 955 lytLGeaqeFnmlepspdshlelvqfIlqkglarpeLRDEiYCQliKQlt +s+d+h++l+q +lq +l +peL+ EiYCQl+KQ++ mKIAA1200 956 --------------ASVDYHVSLAQTALQVCLVHPELQSEIYCQLMKQIS 991 kR.........GWeLLylctglFpPSeSrllkyLlqFLkrradqptetpq +R++++ + ++W+LL+lc+ lF+P++ ++l+y++q+L+r+ad+++et+ mKIAA1200 992 CRppqkyslmqCWQLLALCAPLFLPQH-HFLWYVKQQLQRHADPRSETG- 1039 lmaqglakycle........GaRkqpPsrlEleAik<-* ++a yc++ +++ ++G+R+ Psr+E+ +i+ mKIAA1200 1040 ----QYAIYCQRavertlqtGEREARPSRMEVVSIL 1071 B41: domain 1 of 1, from 1078 to 1315: score 89.0, E = 5.9e-22 *->spkprvlkVylldgttlefevdssttaeelletvcrklglspresey ++ p+ + V++ +gt++ + +d s+t+ e+l+ + ++ g+ ++ + mKIAA1200 1078 HSLPFSIPVHFANGTYQVVGFDGSSTVDEFLQRLNQETGMRKPSQSG 1124 FgLqfedkded..shWldpaktilkqdvks.............pkseplt F+L+ +d+ + + h+l+ +i++++ k++++ ++ ++++++ + + mKIAA1200 1125 FALFTDDPSGRdlEHCLQGRVKICDAISKWeqtlkelhpgkseGGTRVVK 1174 lyFRvkFyppdwhgppeqlkeDptrynllylQvrddilsGrlpcpseeea l ++ ++y++ + + + + r+ ll +Q+ +i+ Gr+p++ +e a mKIAA1200 1175 LMYKNRLYFRS----QVKGETERERL-LLAFQASGEIVAGRFPVT-KELA 1218 llLAaLalqaefGdydpeeeek.......kkslkhvakelslkrflPkql l++AaL q+e+Gd ++ + ++++++ ++ + l+rf+P ++ mKIAA1200 1219 LEMAALMAQVEYGDLEKP---TlpgpggtPPAKAQHLLQQVLDRFYPRRY 1265 ldsikasflqiqltlkewrerIvelhkehaglspeeaklkYLelarrLpp ++ + +l ++ ++ + ++ + g sp e+ + YL +ar++p mKIAA1200 1266 RNGAPPE------QLRHLADMMATKWAALQGCSPPECIRIYLTVARKWP- 1308 tYGvelF<-* ++G+ lF mKIAA1200 1309 LFGAKLF 1315 //