hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm09049/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1196  ( 883 res)   mpm09049

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ZnF_C2H2 zinc finger                                     84.4    1.4e-20   7

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ZnF_C2H2   1/7     120   142 ..     1    23 []     5.0       87
ZnF_C2H2   2/7     155   178 ..     1    23 []    25.3   0.0086
ZnF_C2H2   3/7     501   525 ..     1    23 []     5.1       84
ZnF_C2H2   4/7     531   554 ..     1    23 []    22.3    0.066
ZnF_C2H2   5/7     585   607 ..     1    23 []    10.0       23
ZnF_C2H2   6/7     621   644 ..     1    23 []    21.7      0.1
ZnF_C2H2   7/7     775   798 ..     1    23 []    23.4    0.032

Alignments of top-scoring domains:
ZnF_C2H2: domain 1 of 7, from 120 to 142: score 5.0, E = 87
                   *->ykCpi.gCgksfssk.aLkrHmrvH<-*
                       kCp +gC   f+s   Lk H++     
   mKIAA1196   120    VKCPNsGCWLEFPSIyGLKYHYQ--    142  

ZnF_C2H2: domain 2 of 7, from 155 to 178: score 25.3, E = 0.0086
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      + Cp+ C   f+sk++L++H    H   
   mKIAA1196   155    FPCPF-CEAAFTSKtQLEKHRIwNH    178  

ZnF_C2H2: domain 3 of 7, from 501 to 525: score 5.1, E = 84
                   *->ykCpigCg.ksfssk.aLkrHmr.vH<-*
                       +Cp  C+  + ++   Lk+Hm   H   
   mKIAA1196   501    AVCPT-CNvVTRKTLvGLKKHMEvCH    525  

ZnF_C2H2: domain 4 of 7, from 531 to 554: score 22.3, E = 0.066
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      +kC++ C k+f+sk  L+ H +  H   
   mKIAA1196   531    LKCQH-CRKQFKSKaGLNYHTMaEH    554  

ZnF_C2H2: domain 5 of 7, from 585 to 607: score 10.0, E = 23
                   *->ykCpi.gCgksfssk.aLkrHmrvH<-*
                      ++Cp++gCg  fss   ++ H+r     
   mKIAA1196   585    LRCPQeGCGAAFSSLmGYQYHQR--    607  

ZnF_C2H2: domain 6 of 7, from 621 to 644: score 21.7, E = 0.1
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      + C++ Cgk+++sk     H+r+ H   
   mKIAA1196   621    FPCTH-CGKTYRSKaGHDYHVRsEH    644  

ZnF_C2H2: domain 7 of 7, from 775 to 798: score 23.4, E = 0.032
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      y+C + C+k fss++  k H+ ++H   
   mKIAA1196   775    YRCLL-CPKEFSSEsGVKYHILkTH    798  

//