hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpm/mpm09049/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1196  ( 883 res)   mpm09049

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-C2H2  Zinc finger, C2H2 type                          88.1    1.8e-22   8

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-C2H2    1/8     120   144 ..     1    24 []     7.7       18
zf-C2H2    2/8     155   178 ..     1    24 []    25.0   0.0018
zf-C2H2    3/8     501   525 ..     1    24 []     5.2       31
zf-C2H2    4/8     531   554 ..     1    24 []    21.0    0.029
zf-C2H2    5/8     585   609 ..     1    24 []    17.1     0.41
zf-C2H2    6/8     621   644 ..     1    24 []    18.2      0.2
zf-C2H2    7/8     741   765 ..     1    24 []     4.7       34
zf-C2H2    8/8     775   798 ..     1    24 []    22.3    0.011

Alignments of top-scoring domains:
zf-C2H2: domain 1 of 8, from 120 to 144: score 7.7, E = 18
                   *->ykCpf.dCgksFsrksnLkrHlrtH<-*
                       kCp ++C   F + + Lk H +++   
   mKIAA1196   120    VKCPNsGCWLEFPSIYGLKYHYQRC    144  

zf-C2H2: domain 2 of 8, from 155 to 178: score 25.0, E = 0.0018
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      + Cp  C  +F++k +L++H+  +H   
   mKIAA1196   155    FPCP-FCEAAFTSKTQLEKHRIWnH    178  

zf-C2H2: domain 3 of 8, from 501 to 525: score 5.2, E = 31
                   *->ykCpfdCg.ksFsrksnLkrHlrt.H<-*
                       +Cp  C+  + ++   Lk+H+ + H   
   mKIAA1196   501    AVCP-TCNvVTRKTLVGLKKHMEVcH    525  

zf-C2H2: domain 4 of 8, from 531 to 554: score 21.0, E = 0.029
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                       kC+ +C k F++k+ L+ H + +H   
   mKIAA1196   531    LKCQ-HCRKQFKSKAGLNYHTMAeH    554  

zf-C2H2: domain 5 of 8, from 585 to 609: score 17.1, E = 0.41
                   *->ykCpf.dCgksFsrksnLkrHlrtH<-*
                       +Cp ++Cg +Fs+   ++ H+r++   
   mKIAA1196   585    LRCPQeGCGAAFSSLMGYQYHQRRC    609  

zf-C2H2: domain 6 of 8, from 621 to 644: score 18.2, E = 0.2
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      + C+ +Cgk++++k+    H r++H   
   mKIAA1196   621    FPCT-HCGKTYRSKAGHDYHVRSeH    644  

zf-C2H2: domain 7 of 8, from 741 to 765: score 4.7, E = 34
                   *->ykCpf.dCgksFsrksnLkrHlrtH<-*
                        Cp + C   + + s Lk+Hl ++   
   mKIAA1196   741    VNCPNdCCEAIYASVSGLKAHLASC    765  

zf-C2H2: domain 8 of 8, from 775 to 798: score 22.3, E = 0.011
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      y+C   C k Fs+ s  k H+ ++H   
   mKIAA1196   775    YRCL-LCPKEFSSESGVKYHILKtH    798  

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