hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbp/mbp14005/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1195  ( 716 res)   mbp14005

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
F-box    F-box domain                                    27.4    0.00034   1
zf-TRAF  TRAF-type zinc finger                            5.2       0.18   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-TRAF    1/1      34    88 ..     1    60 []     5.2     0.18
F-box      1/1     581   626 ..     1    44 []    27.4  0.00034

Alignments of top-scoring domains:
zf-TRAF: domain 1 of 1, from 34 to 88: score 5.2, E = 0.18
                   *->HekntCPfvpvpCpnekCgvkkilRedlpdHlsedCpkrevpCpFke
                       e  + ++ +++C    Cg +++  ++ ++H    Cp  +vpC ++e
   mKIAA1195    34    -EP-SVSCLVISCHL-LCG-ATFHMCKESEHTLL-CPLEQVPCLNSE 75   

                   yGCkvevkrenlQ<-*
                   yGC  +++r +l    
   mKIAA1195    76 YGCPLSMARHKLA    88   

F-box: domain 1 of 1, from 581 to 626: score 27.4, E = 0.00034
                   *->lldLPdellleIlsrLdpkdllrlslVSkrwrslvdsl.lwf.kll<
                      l +LP+e+l+ I  +Ld ++l +ls+VS  +r+++ +l   ++ +l 
   mKIAA1195   581    LTSLPLEVLQYIAGFLDSISLSQLSQVSVLMRNICATLlQERgMVL  626  

                   -*
                     
   mKIAA1195     -    -    

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