hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbj/mbj00606/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1194  ( 376 res)   mbj00606

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
Exo_endo_phos Endonuclease/Exonuclease/phosphatase fa   127.7    2.1e-34   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
Exo_endo_phos   1/1       8   357 ..     1   202 []   127.7  2.1e-34

Alignments of top-scoring domains:
Exo_endo_phos: domain 1 of 1, from 8 to 357: score 127.7, E = 2.1e-34
                   *->lkvltwNvnglra.l.l..................llellr.edpDv
                      ++v+++Nv++ ++ +++  +  +++  +++ +++ +++++ ++++D+
   mKIAA1194     8    FSVMCYNVLCDKYaTrQlygycpswalnwdyrkkaIIQEILsCNADI 54   

                   icLQEvklsp.slll.l.ll.gyv.........vytgfgg.gggkgGVai
                   i LQEv +++   ++  +l++ ++++  +++++ +t+   ++++ +G+ai
   mKIAA1194    55 ISLQEVETEQyYSFFlVeLKeRGYngffspksrARTMSEQeRKHVDGCAI 104  

                   lsklpllsvilgi.....................................
                   ++k  ++ ++++++ + +     ++++++   ++  ++++ +     + +
   mKIAA1194   105 FFKTEKFTLVQKHtvefnqlamansegseamlnrvmtkdnigvavllelr 154  

                   ......dfi.rvilasgt.fvvvntHlpagg.rldeRlaqyaelldflsf
                   ++  +   ++++++++ + + v+n+H ++++++ d++l q +++l ++++
   mKIAA1194   155 keliemSSGkPHLGTEKQlILVANAHMHWDPeYSDVKLVQTMMFLSEVKN 204  

                   .................rsdpvilcGDfNarpdeidsa.lk.igkstl..
                     ++ +++ +++  ++ +  p++lc D+N  pd+ +++ l+++g +t ++
   mKIAA1194   205 iidkasrslkssvlgecGTIPLVLCADLNSLPDSGVVEyLStGGVETNhk 254  

                   ....................................elpigfppTywsyr
                   + ++ + +++ ++ + +++++ ++++ +++ + ++ + ++  p+T+++  
   mKIAA1194   255 dfkelrynesltnfscngkngmtngrithgfklksaYENGLMPYTNYTF- 303  

                   gssekkrtpsrlDrilvsg.ll.rvvil.ille..............vlg
                          +++ +D+i++s++ l+ + il+ l+++   +++ ++ ++++ +
   mKIAA1194   304 ------DFKGIIDYIFYSKpQLnTLAILgPLDHhwlvennisgcphpLIP 347  

                   SDHrPVlatl<-*
                   SDH+ ++a+l   
   mKIAA1194   348 SDHFSLFAQL    357  

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