hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mej/mej02325/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1193  ( 524 res)   mej02325

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
Myb_DNA-binding Myb-like DNA-binding domain              42.3    1.1e-08   1
ELM2            ELM2 domain                              36.8      5e-07   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
ELM2              1/1     185   246 ..     1    81 []    36.8    5e-07
Myb_DNA-binding   1/1     289   335 ..     1    65 []    42.3  1.1e-08

Alignments of top-scoring domains:
ELM2: domain 1 of 1, from 185 to 246: score 36.8, E = 5e-07
                   *->geIrVGskyQAdvPefCRlpeterdeseeredLTkkedeekldelvW
                      +eI+VG+++QAd+  +     +  d  +e+e           d+l+W
   mKIAA1193   185    KEIMVGPQFQADLNIL--HLNRHCDKIYENE-----------DQLLW 218  

                   sPeDsqnqlddekidqylrlarslkkslgtfara<-*
                   sP+     l +++++++l  a +  ++   +a+    
   mKIAA1193   219 SPS----VLPEREVEEFLYRAVK--RRWQEMAGP    246  

Myb_DNA-binding: domain 1 of 1, from 289 to 335: score 42.3, E = 1.1e-08
                   *->rgrWtaeEdellveavekhGkgfgIrlsltkanWkkIaeklgpgssn
                         W++eE+  ++++++ hGk+           +++I +        
   mKIAA1193   289    LCAWSEEECRNFEHGFRVHGKN-----------FHLIQANK------ 318  

                   nvlgrtaeqcklryykyk<-*
                    v +r++ +c+++yy +k   
   mKIAA1193   319 -VRTRSVGECVEYYYLWK    335  

//