hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbp/mbp00156/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1186 ( 404 res) mbp00156 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SEC14 Domain in homologues of a S. cerevisiae phos 219.9 2.2e-61 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SEC14 1/1 77 247 .. 1 184 [] 219.9 2.2e-61 Alignments of top-scoring domains: SEC14: domain 1 of 1, from 77 to 247: score 219.9, E = 2.2e-61 *->elevgkayipggrigtregyDkdGrpVlieragrfdpkgllksvtle ++ev+++y++ggr+ gyD dG+pV++ ++g++d+kgll+s +++ mKIAA1186 77 PPEVIQQYLSGGRC----GYDLDGCPVWYDIIGPLDAKGLLFSASKQ 119 ellrylvyvlEkalqelpaklekktggiegftvifDlkglsmsnfwspdl +llr + +E lqe++ ++ k++++ie++t+i+D++gl+++++w+p++ mKIAA1186 120 DLLRTKMRDCELLLQECIQQTTKLGKKIETITMIYDCEGLGLKHLWKPAV 169 sllrkilkilqdhYPErLgkvliiNpPwvmaffrvlwkiikpFldektre + + ++l +++++YPE+L++++++++P+ +f+v++++ikpFl+e+tr+ mKIAA1186 170 EAYGEFLTMFEENYPETLKRLFVVKAPK---LFPVAYNLIKPFLSEDTRR 216 KivfvgpnkVsdsdwkeeLlkyidpeqLPeelGGtlk<-* Ki+++g +wke Llk+i p+qLP+e+GGt + mKIAA1186 217 KIMVLG------ANWKEVLLKHISPDQLPVEYGGTMT 247 //