hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mph/mph01717/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA1185  ( 521 res)   mph01717

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
LRR_TYP  Leucine-rich repeats, typical (most populate    94.1    1.6e-23   5
LRR_PS   Leucine-rich repeat, plant-specific subfamil    63.2    3.4e-14   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
LRR_PS     1/5      16    39 ..     1    24 []     4.5  3.1e+02
LRR_PS     2/5      40    62 ..     1    24 []    11.6       38
LRR_TYP    1/5      40    63 ..     1    24 []    30.1   0.0003
LRR_PS     3/5      70    92 ..     1    24 []    22.6    0.056
LRR_TYP    2/5      70    93 ..     1    24 []    30.4  0.00025
LRR_PS     4/5      94   116 ..     1    24 []     5.0  2.7e+02
LRR_TYP    3/5      95   117 ..     1    24 []    16.2      4.4
LRR_TYP    4/5     120   142 ..     1    24 []     4.6  1.1e+02
LRR_PS     5/5     143   165 ..     1    24 []    27.4    0.002
LRR_TYP    5/5     143   166 ..     1    24 []    30.3  0.00027

Alignments of top-scoring domains:
LRR_PS: domain 1 of 5, from 16 to 39: score 4.5, E = 3.1e+02
                   *->LtsLqvLdLsnNnLsGeIPsslgn<-*
                      L++L +L L  N L   + ++lg    
   mKIAA1185    16    LPQLHSLVLRRNALGPGLSPELGP    39   

LRR_PS: domain 2 of 5, from 40 to 62: score 11.6, E = 38
                   *->LtsLqvLdLsnNnLsGeIPsslgn<-*
                      L+ L+vLdLs+N L  ++P+  g    
   mKIAA1185    40    LPALRVLDLSGNALE-TLPPGEGL    62   

LRR_TYP: domain 1 of 5, from 40 to 63: score 30.1, E = 0.0003
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      Lp+Lr+LdLs+N+L++LPpg   g   
   mKIAA1185    40    LPALRVLDLSGNALETLPPGEGLG    63   

LRR_PS: domain 3 of 5, from 70 to 92: score 22.6, E = 0.056
                   *->LtsLqvLdLsnNnLsGeIPsslgn<-*
                      L++Lq+L+Ls+N+L  e+P++l +   
   mKIAA1185    70    LPQLQSLNLSGNRLR-ELPADLAR    92   

LRR_TYP: domain 2 of 5, from 70 to 93: score 30.4, E = 0.00025
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      Lp+L++L+Ls+N+L++LP+++ ++   
   mKIAA1185    70    LPQLQSLNLSGNRLRELPADLARC    93   

LRR_PS: domain 4 of 5, from 94 to 116: score 5.0, E = 2.7e+02
                   *->LtsLqvLdLsnNnLsGeIPsslgn<-*
                       ++Lq+L+L +N+L   +P++l++   
   mKIAA1185    94    APRLQSLNLTGNRLD-AFPPELFR    116  

LRR_TYP: domain 3 of 5, from 95 to 117: score 16.2, E = 4.4
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                       p L++L+L +N+L + Pp++F++   
   mKIAA1185    95    -PRLQSLNLTGNRLDAFPPELFRP    117  

LRR_TYP: domain 4 of 5, from 120 to 142: score 4.6, E = 1.1e+02
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      Lp L eL   +N L++L p++ ++   
   mKIAA1185   120    LPLLSELAAADNCLRELSPDI-AH    142  

LRR_PS: domain 5 of 5, from 143 to 165: score 27.4, E = 0.002
                   *->LtsLqvLdLsnNnLsGeIPsslgn<-*
                      L sL++LdLsnN+L+ eIP++l +   
   mKIAA1185   143    LASLKTLDLSNNQLT-EIPAELAD    165  

LRR_TYP: domain 5 of 5, from 143 to 166: score 30.3, E = 0.00027
                   *->LpnLreLdLsnNqLtsLPpgaFqg<-*
                      L +L++LdLsnNqLt++P+++ ++   
   mKIAA1185   143    LASLKTLDLSNNQLTEIPAELADC    166  

	[output cut off at A = 10 top alignments]
//