hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mia/mia05093/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1184 ( 388 res) mia05093 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Lactamase_B Metallo-beta-lactamase superfamily 103.3 4.8e-27 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Lactamase_B 1/1 132 294 .. 1 160 [] 103.3 4.8e-27 Alignments of top-scoring domains: Lactamase_B: domain 1 of 1, from 132 to 294: score 103.3, E = 4.8e-27 *->gvnsyLve..gggeavLiDtGlg.daallllgldpkdidaillTHaH +++syL+ ++ g av +D+ ++++++ ++++ ++ ail+TH H mKIAA1184 132 DNYSYLIIdtQAGLAVAVDPSDPrAVQAS-IEKERVNLVAILCTHKH 177 lDHiGGlpelleafpapvvaa.eda.al........g.gi.g.gt.levt +DH+GG+++l +++ + v++++ ++++ ++ + +++++++++++++ mKIAA1184 178 WDHSGGNRDLSRRHRDCRVYGsPQDgIPylthplchQdVVsVgRLqIRAL 227 htpghgpghvvvyl.....p.gkvlftGDllfs.gtgr.dlliaestysl +tpgh+ gh+v+ l++++ ++ + lf+GDllf +g+gr+++ mKIAA1184 228 ATPGHTQGHLVYLLdgepyKgPSCLFSGDLLFLsGCGRtFE--------- 268 rklpggdaedlypslaelllesllklaalp.dtvvpPgH<-* + ae+ l+sl+ +++l +dt+++PgH mKIAA1184 269 -------------GTAETMLSSLDTVLDLGdDTLLWPGH 294 //