hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpj/mpj00185/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1182  ( 520 res)   mpj00185

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
COBRA1   Cofactor of BRCA1 (COBRA1)                    1386.0          0   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
COBRA1     1/1      46   520 .]     1   479 []  1386.0        0

Alignments of top-scoring domains:
COBRA1: domain 1 of 1, from 46 to 520: score 1386.0, E = 0
                   *->mpslqPVVMcvLkhlPkvpeKkLklvmaDkELYkdcavEVKRQIWqD
                      mpslqPVVMcv+khlPkvpeKkLklvmaDkELY++cavEVKRQIWqD
   mKIAA1182    46    MPSLQPVVMCVMKHLPKVPEKKLKLVMADKELYRACAVEVKRQIWQD 92   

                   NQaLFGDEVSPLLkQYIlEKEaaLFSdeLsllhnFFsPsPKtRRQGEVVq
                   NQaLFGDEVSPLLkQYIlEKE+aLFS+eLs+lhnFFsPsPKtRRQGEVVq
   mKIAA1182    93 NQALFGDEVSPLLKQYILEKESALFSTELSVLHNFFSPSPKTRRQGEVVQ 142  

                   KLtqMiGknVKLYDMVLQFLRTLFLRTRNVHYcTLRAELLMsLHDLdvsd
                   KLtqM+GknVKLYDMVLQFLRTLFLRTRNVHYcTLRAELLMsLHDLdvsd
   mKIAA1182   143 KLTQMVGKNVKLYDMVLQFLRTLFLRTRNVHYCTLRAELLMSLHDLDVSD 192  

                   IisVDPCHKFtWCLDACIREkfVDaKRaRELQGFLDgvKkGQEQVLGDLS
                   I++VDPCHKFtWCLDACIRE+fVD+KRaRELQGFLDgvKkGQEQVLGDLS
   mKIAA1182   193 ICTVDPCHKFTWCLDACIRERFVDSKRARELQGFLDGVKKGQEQVLGDLS 242  

                   MiLCDPfAiNtLalStiriLQeLisqeglPRdspdLlLLLRmLaLGqgAW
                   MiLCDPfAiNtL+lStir+LQeL+sqe+lPRdspdLlLLLR+LaLGqgAW
   mKIAA1182   243 MILCDPFAINTLSLSTIRHLQELVSQETLPRDSPDLLLLLRLLALGQGAW 292  

                   dmIDSQvFKEPkldsevvTkFLPaLMSlvVDDytfhveqKLPaeEkesai
                   d+IDSQvFKEPk+++e++TkFLP+LMSlvVDD+tf+v+qKLPaeEk    
   mKIAA1182   293 DLIDSQVFKEPKMEAELITKFLPMLMSLVVDDFTFNVDQKLPAEEK---- 338  

                   tsieypgtlPeafekYiqenrvAcelglYYtLHiakqrnknallRllpiL
                   +s++yp+tlPe+f+k++qe+r+Ace+glYY+LHi+kqrnknallRllp+L
   mKIAA1182   339 ASVTYPNTLPESFTKFLQEQRMACEVGLYYVLHITKQRNKNALLRLLPGL 388  

                   vetkdDlAfeDiFLHlLtgllillsDEFanEdFCtglFDeFLltgltrKe
                   vet++DlAf+DiFLHlLtg+l+ll+DEFa+EdFC++lFD+F+lt+++rKe
   mKIAA1182   389 VETFGDLAFSDIFLHLLTGSLVLLADEFALEDFCSSLFDGFFLTASPRKE 438  

                   NVhRHvLrLLlhlHqkvaparLetLmKaLePtaQssEsVkeLYenLkekl
                   NVhRHvLrLLlhlH++vap++Le+L+KaLePt+Qs+E+VkeLY++L+ekl
   mKIAA1182   439 NVHRHVLRLLLHLHARVAPSKLEALQKALEPTGQSGEAVKELYSQLGEKL 488  

                   etldltkesPaqpeEtPdlDlpLksVptPgtl<-*
                   e+ld++k+sP+q++EtP+lDlpL+sVp+P+tl   
   mKIAA1182   489 EQLDHRKPSPTQAAETPALDLPLPSVPAPATL    520  

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