hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mng/mng09212/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA1174  ( 467 res)   mng09212

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
LMBR1    LMBR1-like membrane protein                    671.5   4.2e-198   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
LMBR1      1/1       3   429 ..     1   690 []   671.5 4.2e-198

Alignments of top-scoring domains:
LMBR1: domain 1 of 1, from 3 to 429: score 671.5, E = 4.2e-198
                   *->illLlllilylfsyvlltrYkrpreqetlsadededavvnrislilv
                      i +Ll+++ly++++++ltr+k+p+e++t   ++deda+vn+i l l+
   mKIAA1174     3    ISILLFATLYILCHIFLTRFKKPAEFTT---VDDEDATVNKIALELC 46   

                   tftLavsliavlLLPvDvasTlyrkCvedrrrinevllsypgsyvpeael
                   tftLav+l+avlLLP++++s             nevlls+p++y      
   mKIAA1174    47 TFTLAVALGAVLLLPFSIIS-------------NEVLLSLPRNY------ 77   

                   yvqwlngslilgLWnlvYwssnlllffllPFvyfFyEsggFtgskKGaqi
                   y+qwlngsli+gLWnlv+++snl+l+fl+PF+yfF+Es+gF+gs+KG  +
   mKIAA1174    78 YIQWLNGSLIHGLWNLVFLFSNLSLVFLMPFAYFFTESEGFAGSRKG--V 125  

                   kaavyenlvyylllalllLvlliVlsalDFSVRHLASAtStFPtSWqFSN
                   + +vye++v++ ll+ll+L++++V+sa+                      
   mKIAA1174   126 LGRVYETVVMLILLTLLVLGMVWVASAI---------------------- 153  

                   tqPCidnnalqesekvkllfeesltnlwenllpyvyScssfwGllLllil
                       +dn++++         +esl+++we++lpy+ySc+sf+G+lLll++
   mKIAA1174   154 ----VDNDKAS---------RESLYDFWEYYLPYLYSCISFLGVLLLLVC 190  

                   tgyGlvelPsslwkllvreyalrkeyfkaakLesekaeaeekvddilesv
                   t+ Gl++++s+++kllv+                                
   mKIAA1174   191 TPLGLARMFSVTGKLLVK-------------------------------- 208  

                   sllsprlledlneqrskiatelsklsrelqnaassnqaestsaskgdtgr
                       prlledl+eq+ ++a+e+++l+r+++                    
   mKIAA1174   209 ----PRLLEDLEEQLNCSAFEEAALTRRIC-------------------- 234  

                   pivksedklllqheedlkslqtlyrqlaqwevdydtklfLedvakkessk
                                                                     
   mKIAA1174     - -------------------------------------------------- -    

                   krkeksefyRqlkeYesstlSlrRrlksdkdelkrelsevktevtekvlL
                                   ++t S++  l++d+++l+r++ +++ +   +vlL
   mKIAA1174   235 ----------------NPT-SCW--LPLDMELLHRQVLALQAQ---RVLL 262  

                   EkrrknYERRDAtGWKYissFRAtRtasaiqrslvyplawltlLvltfls
                   Ekrrk                     asa+qr+l+ypla+l+lLvlt ls
   mKIAA1174   263 EKRRK---------------------ASAWQRNLGYPLAMLCLLVLTGLS 291  

                   iLlVvtnilsllivaselplflvfptLspslfsiliaslssfgllgaave
                   +L+V+ +il+lli+++++p+++       ++ ++++as+s++g++ga+++
   mKIAA1174   292 VLIVAVHILELLIDEAAMPRGM-------QDAALGQASFSKLGSFGAIIQ 334  

                   fvlIfYlmvcsyvGlyslgfklvflrlyrlkpgdTtmtalLincgilLvi
                   +vlIfYlmv+s+vG+ys+++    + ++r++++dT+mt++++nc++lLv 
   mKIAA1174   335 VVLIFYLMVSSVVGFYSSPL----FGSLRPRWHDTSMTQIIGNCVCLLV- 379  

                   VLHtSYlrsaLPicynflGltrfdllgsfgkifGketdllklmghlDviA
                         l+saLP+++++lGltrfdllg+fg                    
   mKIAA1174   380 ------LSSALPVFSRTLGLTRFDLLGDFG-------------------- 403  

                   PKDqCtVtRtYVFLHKFslfwlgyfyivllynilFviltalsL<-*
                                    +++wlg+fyiv+lyn +F++lt+l+L   
   mKIAA1174   404 -----------------RFNWLGNFYIVFLYNAAFAGLTTLCL    429  

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