hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mfj/mfj66157/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA1172 ( 1200 res) mfj66157 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- RRM RNA recognition motif 61.3 1.3e-13 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- RRM 1/1 588 657 .. 1 121 [] 61.3 1.3e-13 Alignments of top-scoring domains: RRM: domain 1 of 1, from 588 to 657: score 61.3, E = 1.3e-13 *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri tl+Vg L ++ +t++d+ l ++fG+++s+ + mKIAA1172 588 TLWVGQL--DKRTTQQDVASLL--------------EEFGPIESINM 618 vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli ++ +G+a++ + ++dA +A + mKIAA1172 619 IPP---------------------------RGCAYIVMVHRQDAYRA--L 639 ealnaskGkeledgGrptlglrVe<-* ++l +++++ + + +++ mKIAA1172 640 QKLS-RGNYKV--NQKS---IKIA 657 //